A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12.4
nTPM
Monaco:
126.6
nTPM
Schmiedel:
218.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.4
HPA sample
nTPM
NK-cell nTPM: 12.4
Samples: 6
Max nTPM: 25.9
Min nTPM: 5.2
P10809_1013
16.6
P10809_1033
6.6
P10809_1052
10.0
P10809_1071
25.9
P10809_1093
5.2
P10809_1103
10.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
126.6
Monaco sample
nTPM
NK-cell nTPM: 126.6
Samples: 4
Max nTPM: 228.3
Min nTPM: 16.4
RHH5316_R3683
228.3
RHH5224_R3596
16.4
RHH5253_R3625
216.0
RHH5282_R3654
45.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
218.2
Schmiedel sample id
TPM
NK-cell TPM: 218.2
Samples: 90
Max TPM: 385.4
Min TPM: 52.4
NK_1
385.4
NK_2
382.9
NK_3
371.4
NK_4
365.5
NK_5
351.5
NK_6
350.7
NK_7
349.5
NK_8
349.1
NK_9
348.1
NK_10
345.2
NK_11
332.2
NK_12
327.7
NK_13
326.4
NK_14
325.1
NK_15
321.5
NK_16
314.6
NK_17
309.6
NK_18
301.6
NK_19
297.8
NK_20
285.2
NK_21
284.1
NK_22
283.5
NK_23
281.6
NK_24
278.3
NK_25
276.5
NK_26
272.9
NK_27
265.2
NK_28
264.5
NK_29
263.4
NK_30
261.4
NK_31
256.0
NK_32
254.4
NK_33
253.4
NK_34
245.7
NK_35
243.1
NK_36
242.8
NK_37
242.4
NK_38
241.0
NK_39
240.6
NK_40
236.9
NK_41
236.9
NK_42
232.4
NK_43
230.4
NK_44
229.6
NK_45
228.3
NK_46
227.5
NK_47
224.5
NK_48
219.7
NK_49
214.3
NK_50
213.4
NK_51
201.3
NK_52
200.2
NK_53
194.8
NK_54
191.3
NK_55
190.7
NK_56
189.6
NK_57
187.9
NK_58
184.0
NK_59
176.1
NK_60
175.2
NK_61
172.5
NK_62
165.3
NK_63
165.3
NK_64
164.8
NK_65
159.8
NK_66
159.4
NK_67
145.4
NK_68
144.4
NK_69
141.0
NK_70
140.5
NK_71
132.1
NK_72
130.2
NK_73
129.6
NK_74
128.6
NK_75
125.0
NK_76
123.1
NK_77
117.5
NK_78
115.4
NK_79
115.1
NK_80
102.9
NK_81
98.0
NK_82
96.2
NK_83
94.0
NK_84
93.2
NK_85
84.1
NK_86
76.9
NK_87
69.8
NK_88
66.3
NK_89
52.5
NK_90
52.4
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