On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
908.1
nTPM
HPA Brain:
311.9
nTPM
GTEx:
908.1
nTPM
FANTOM5:
339.9
Scaled Tags Per Million
Macaque:
1.8
nTPM
Mouse:
23.5
nTPM
Rat:
0.6
nTPM
Pig:
0.0
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
311.9
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 284.9
2586
Male, age 75, left hemisphere
339.3
2666
Male, age 74, left hemisphere
338.5
1870
Female, age 42, unknown
316.6
2828
Female, age 72, unknown
289.3
2411
Female, age 72, unknown
282.2
1833
Male, age 53, unknown
270.8
1830
Male, age 51, unknown
267.4
2219
Male, age 76, both hemispheres
257.5
1827
Male, age 72, unknown
243.6
2019
Male, age 18, unknown
243.6
Dorsal raphe nucleus nTPM: 273.2
2016
Female, age 72, unknown
293.0
2298
Female, age 72, unknown
274.5
1828
Male, age 53, unknown
271.0
2750
Male, age 76, both hemispheres
270.6
2047
Male, age 72, unknown
256.8
Inferior colliculus nTPM: 265.1
1890
Male, age 53, unknown
291.3
2849
Male, age 72, unknown
271.8
1848
Female, age 42, unknown
253.7
2097
Female, age 72, unknown
243.6
Median raphe nucleus nTPM: 234.8
2220
Male, age 76, midline
234.8
Periaquaductal grey, anterior nTPM: 270.7
2502
Female, age 75, unknown
321.6
1795
Male, age 51, unknown
245.7
1947
Male, age 18, unknown
244.7
Periaquaductal grey, dorsal nTPM: 249.3
1831
Male, age 72, unknown
272.8
1840
Male, age 53, unknown
257.0
2850
Male, age 76, both hemispheres
235.6
2464
Female, age 72, unknown
231.7
Periaquaductal grey, lateral nTPM: 239.5
2053
Male, age 18, unknown
287.7
2140
Male, age 76, both hemispheres
225.7
2272
Male, age 74, both hemispheres
205.0
Pretectal area nTPM: 252.7
2316
Male, age 76, right hemisphere
289.8
1815
Male, age 53, unknown
276.4
1817
Female, age 42, unknown
272.2
2825
Male, age 18, unknown
260.1
2007
Male, age 72, unknown
259.3
2407
Male, age 75, both hemispheres
256.3
2224
Female, age 72, unknown
253.6
1816
Male, age 51, unknown
240.8
1944
Female, age 72, unknown
233.8
2667
Female, age 75, unknown
230.2
2273
Male, age 74, both hemispheres
206.8
Red nucleus nTPM: 311.9
2503
Female, age 72, unknown
383.8
1865
Male, age 51, unknown
347.9
1904
Male, age 53, unknown
328.7
1821
Female, age 72, unknown
324.7
2584
Male, age 75, left hemisphere
324.7
2769
Male, age 72, unknown
319.8
2725
Female, age 75, unknown
308.9
2227
Male, age 72, unknown
303.8
2785
Male, age 18, unknown
293.9
2588
Male, age 74, left hemisphere
284.0
2823
Male, age 76, right hemisphere
262.1
1954
Female, age 42, unknown
260.4
Substantia nigra nTPM: 309.2
2699
Male, age 18, unknown
409.3
1851
Male, age 51, unknown
364.1
2665
Male, age 74, both hemispheres
351.6
2409
Female, age 72, unknown
327.9
1916
Female, age 42, unknown
303.5
2590
Female, age 75, unknown
282.8
1889
Female, age 72, unknown
279.7
2241
Male, age 72, unknown
269.8
2583
Male, age 75, right hemisphere
253.5
1941
Male, age 53, unknown
249.7
Superior colliculus nTPM: 282.8
2587
Male, age 74, left hemisphere
343.2
1913
Female, age 42, unknown
337.2
1995
Male, age 72, unknown
333.2
1796
Male, age 53, unknown
279.7
2664
Male, age 75, both hemispheres
279.6
2668
Female, age 75, unknown
276.7
1839
Male, age 51, unknown
271.5
1895
Male, age 76, right hemisphere
261.6
2261
Male, age 18, unknown
223.6
2087
Female, age 72, unknown
221.7
Ventral tegmental area nTPM: 288.0
1915
Female, age 42, unknown
336.1
2223
Female, age 72, unknown
299.3
2410
Female, age 72, unknown
295.1
2021
Male, age 53, unknown
278.5
1942
Male, age 51, unknown
266.7
2218
Male, age 76, both hemispheres
252.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
908.1
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 908.1
Samples: 183
Max nTPM: 2276.4
Min nTPM: 295.5
Std nTPM: 325.1
Median nTPM: 847.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
2276.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
2040.5
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
1976.3
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
1780.9
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
1752.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
1658.0
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
1650.7
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
1511.3
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
1501.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
1449.7
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
1438.1
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
1436.3
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
1405.1
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
1386.9
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
1353.8
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
1326.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
1311.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
1302.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
1300.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
1295.8
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
1282.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
1272.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
1272.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
1261.7
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
1246.9
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
1244.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
1227.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
1221.0
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
1214.0
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1204.9
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
1199.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
1195.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
1181.1
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
1174.5
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
1165.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
1141.7
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
1135.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
1127.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
1121.3
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
1116.8
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
1115.1
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
1110.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
1105.1
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
1083.3
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
1076.6
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
1071.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
1067.8
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
1061.0
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
1056.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
1054.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
1052.2
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1039.6
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
1039.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
1038.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
1031.7
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
1027.8
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
1027.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
1024.8
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
1024.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
1020.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
1019.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
1011.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
1008.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
996.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
992.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
989.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
983.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
977.8
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
975.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
973.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
965.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
963.1
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
963.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
962.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
957.0
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
930.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
928.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
926.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
918.7
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
918.1
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
917.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
917.3
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
910.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
899.7
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
895.8
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
895.3
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
887.5
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
883.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
876.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
861.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
849.8
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
847.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
844.6
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
833.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
826.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
823.8
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
823.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
819.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
819.7
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
819.5
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
808.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
801.8
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
798.6
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
794.7
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
793.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
793.0
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
790.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
789.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
785.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
779.1
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
766.3
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
762.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
758.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
758.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
756.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
755.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
746.9
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
743.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
741.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
740.5
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
737.7
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
733.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
726.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
722.5
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
715.9
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
715.1
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
711.2
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
710.4
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
705.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
696.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
694.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
689.7
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
689.3
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
683.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
680.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
680.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
678.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
678.2
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
674.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
672.9
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
671.6
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
664.2
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
663.8
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
656.4
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
656.3
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
650.4
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
649.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
646.9
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
633.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
632.4
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
626.3
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
623.2
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
606.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
605.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
605.3
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
603.0
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
601.8
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
600.8
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
586.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
581.5
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
574.3
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
571.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
569.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
569.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
564.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
563.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
563.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
557.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
543.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
541.7
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
541.7
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
525.5
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
510.9
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
503.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
490.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
478.3
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
444.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
422.3
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
379.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
373.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
356.4
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
312.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
295.5
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1.8
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 1.8
Samples: 1
Max nTPM: 1.8
Min nTPM: 1.8
Sample A
1.8
Midbrain nTPM: 0.5
Samples: 1
Max nTPM: 0.5
Min nTPM: 0.5
Sample A
0.5
Superior colliculi nTPM: 0.9
Samples: 1
Max nTPM: 0.9
Min nTPM: 0.9
Sample A
0.9
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.0
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 0.0
Samples: 3
Max nTPM: 0.1
Min nTPM: 0.0
Sample A
Female
0.0
Sample B
Female
0.0
Sample C
Male
0.1
Midbrain nTPM: 0.0
Samples: 3
Max nTPM: 0.1
Min nTPM: 0.0
Sample B
Female
0.1
Sample C
Male
0.0
Sample D
Male
0.0
Periaqueductal gray nTPM: 0.0
Samples: 3
Max nTPM: 0.0
Min nTPM: 0.0
Sample B
Female
0.0
Sample C
Male
0.0
Sample D
Male
0.0
Superior colliculi nTPM: 0.0
Samples: 4
Max nTPM: 0.1
Min nTPM: 0.0
Sample A
Female
0.0
Sample B
Female
0.0
Sample C
Male
0.1
Sample D
Male
0.0
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
23.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 23.5
Samples: 4
Max nTPM: 27.4
Min nTPM: 19.3
Sample A
27.4
Sample B
26.5
Sample C
19.3
Sample D
20.8
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.6
Rat sample
Sample description
nTPM
Midbrain nTPM: 0.6
Samples: 4
Max nTPM: 0.7
Min nTPM: 0.3
Sample A
0.7
Sample A
0.3
Sample A
0.7
Sample A
0.7
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The Human Protein Atlas project is funded
