MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:908.1 nTPM
HPA Brain:310.9 nTPM
GTEx:908.1 nTPM
FANTOM5:339.9 Scaled Tags Per Million
Pig:0.0 nTPM
Mouse:32.7 nTPM
Allen mouse:9.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 310.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 284.0
2586 Male, age 75, left hemisphere 339.4
2666 Male, age 74, left hemisphere 337.1
1870 Female, age 42, unknown 315.7
2828 Female, age 72, unknown 288.3
2411 Female, age 72, unknown 281.3
1833 Male, age 53, unknown 269.9
1830 Male, age 51, unknown 266.6
2219 Male, age 76, both hemispheres 256.5
2019 Male, age 18, unknown 242.9
1827 Male, age 72, unknown 242.8
Dorsal raphe nucleus
nTPM: 272.1
2016 Female, age 72, unknown 291.8
2298 Female, age 72, unknown 273.4
1828 Male, age 53, unknown 270.0
2750 Male, age 76, both hemispheres 269.5
2047 Male, age 72, unknown 256.0
Inferior colliculus
nTPM: 264.2
1890 Male, age 53, unknown 290.3
2849 Male, age 72, unknown 270.9
1848 Female, age 42, unknown 252.8
2097 Female, age 72, unknown 242.7
Median raphe nucleus
nTPM: 233.9
2220 Male, age 76, midline 233.9
Periaquaductal grey, anterior
nTPM: 269.8
2502 Female, age 75, unknown 320.5
1795 Male, age 51, unknown 244.9
1947 Male, age 18, unknown 243.9
Periaquaductal grey, dorsal
nTPM: 248.4
1831 Male, age 72, unknown 271.8
1840 Male, age 53, unknown 256.2
2850 Male, age 76, both hemispheres 234.5
2464 Female, age 72, unknown 230.9
Periaquaductal grey, lateral
nTPM: 238.5
2053 Male, age 18, unknown 286.7
2140 Male, age 76, both hemispheres 224.7
2272 Male, age 74, both hemispheres 204.1
Pretectal area
nTPM: 251.9
2316 Male, age 76, right hemisphere 288.6
1815 Male, age 53, unknown 275.7
1817 Female, age 42, unknown 271.3
2825 Male, age 18, unknown 259.2
2007 Male, age 72, unknown 258.4
2407 Male, age 75, both hemispheres 256.3
2224 Female, age 72, unknown 252.6
1816 Male, age 51, unknown 240.2
1944 Female, age 72, unknown 233.0
2667 Female, age 75, unknown 229.5
2273 Male, age 74, both hemispheres 205.9
Red nucleus
nTPM: 310.9
2503 Female, age 72, unknown 382.5
1865 Male, age 51, unknown 346.7
1904 Male, age 53, unknown 327.4
2584 Male, age 75, left hemisphere 324.8
1821 Female, age 72, unknown 323.6
2769 Male, age 72, unknown 318.7
2725 Female, age 75, unknown 307.9
2227 Male, age 72, unknown 302.8
2785 Male, age 18, unknown 292.9
2588 Male, age 74, left hemisphere 283.0
2823 Male, age 76, right hemisphere 261.0
1954 Female, age 42, unknown 259.5
Substantia nigra
nTPM: 308.2
2699 Male, age 18, unknown 407.9
1851 Male, age 51, unknown 362.9
2665 Male, age 74, both hemispheres 350.0
2409 Female, age 72, unknown 326.8
1916 Female, age 42, unknown 302.3
2590 Female, age 75, unknown 282.0
1889 Female, age 72, unknown 278.7
2241 Male, age 72, unknown 269.1
2583 Male, age 75, right hemisphere 253.7
1941 Male, age 53, unknown 249.0
Superior colliculus
nTPM: 281.9
2587 Male, age 74, left hemisphere 341.7
1913 Female, age 42, unknown 335.9
1995 Male, age 72, unknown 332.1
2664 Male, age 75, both hemispheres 279.6
1796 Male, age 53, unknown 278.7
2668 Female, age 75, unknown 275.7
1839 Male, age 51, unknown 270.6
1895 Male, age 76, right hemisphere 260.6
2261 Male, age 18, unknown 222.9
2087 Female, age 72, unknown 220.9
Ventral tegmental area
nTPM: 287.0
1915 Female, age 42, unknown 334.9
2223 Female, age 72, unknown 298.3
2410 Female, age 72, unknown 293.9
2021 Male, age 53, unknown 277.5
1942 Male, age 51, unknown 265.8
2218 Male, age 76, both hemispheres 251.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 908.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 908.1
Samples: 183

Max nTPM: 2276.4
Min nTPM: 295.5
Std nTPM: 325.1
Median nTPM: 847.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2276.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2040.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1976.3
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 1780.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 1752.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1658.0
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 1650.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1511.3
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 1501.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1449.7
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 1438.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 339.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 339.9
FF:10158-103A5 76 years, female 339.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 0.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.1
Sample D Male 0.0
Midbrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.1
Sample B Female 0.1
Sample C Male 0.0
Sample D Male 0.0
Periaqueductal gray
nTPM: 0.0
Samples: 3

Max nTPM: 0.0
Min nTPM: 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Superior colliculi
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.1
Sample D Male 0.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 32.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.7
Samples: 4

Max nTPM: 45.2
Min nTPM: 24.6
Sample A Male 45.2
Sample B Male 26.7
Sample C Female 24.6
Sample D Female 34.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.5
69818379 Antisense, RP_050510_04_H09, Mouse strain C57BL/6J (56 days, male) 9.5

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