A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2343.6
nTPM
Monaco:
581.9
nTPM
Schmiedel:
716.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2343.6
HPA sample
nTPM
Memory B-cell nTPM: 2343.6
Samples: 6
Max nTPM: 2588.8
Min nTPM: 1856.3
P10809_1017
1856.3
P10809_1025
2182.2
P10809_1044
2568.3
P10809_1063
2429.9
P10809_1092
2436.0
P10809_1105
2588.8
Naive B-cell nTPM: 2157.2
Samples: 6
Max nTPM: 2735.1
Min nTPM: 1796.2
P10809_1011
1889.3
P10809_1029
1796.2
P10809_1048
2735.1
P10809_1067
2157.7
P10809_1091
2041.7
P10809_1104
2323.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
581.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 581.9
Samples: 4
Max nTPM: 840.7
Min nTPM: 158.7
RHH5310_R3677
567.5
RHH5218_R3590
158.7
RHH5247_R3619
840.7
RHH5276_R3648
760.7
Naive B-cell nTPM: 555.7
Samples: 4
Max nTPM: 925.2
Min nTPM: 187.6
RHH5308_R3675
692.5
RHH5216_R3588
187.6
RHH5245_R3617
925.2
RHH5274_R3646
417.4
Non-switched memory B-cell nTPM: 456.9
Samples: 4
Max nTPM: 714.2
Min nTPM: 217.9
RHH5309_R3676
667.8
RHH5217_R3589
227.8
RHH5246_R3618
217.9
RHH5275_R3647
714.2
Plasmablast nTPM: 491.7
Samples: 4
Max nTPM: 608.9
Min nTPM: 278.7
RHH5312_R3679
608.9
RHH5220_R3592
278.7
RHH5249_R3621
500.6
RHH5278_R3650
578.7
Switched memory B-cell nTPM: 441.5
Samples: 4
Max nTPM: 580.1
Min nTPM: 265.0
RHH5311_R3678
572.9
RHH5219_R3591
348.2
RHH5248_R3620
265.0
RHH5277_R3649
580.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
716.6
Schmiedel sample id
TPM
Naive B-cell TPM: 716.6
Samples: 91
Max TPM: 1122.7
Min TPM: 225.5
B_CELL_NAIVE_1
1122.7
B_CELL_NAIVE_2
1025.6
B_CELL_NAIVE_3
1015.5
B_CELL_NAIVE_4
974.1
B_CELL_NAIVE_5
973.5
B_CELL_NAIVE_6
954.2
B_CELL_NAIVE_7
949.1
B_CELL_NAIVE_8
940.2
B_CELL_NAIVE_9
939.6
B_CELL_NAIVE_10
929.4
B_CELL_NAIVE_11
925.3
B_CELL_NAIVE_12
921.6
B_CELL_NAIVE_13
918.6
B_CELL_NAIVE_14
914.6
B_CELL_NAIVE_15
910.9
B_CELL_NAIVE_16
908.8
B_CELL_NAIVE_17
906.4
B_CELL_NAIVE_18
891.5
B_CELL_NAIVE_19
891.4
B_CELL_NAIVE_20
872.9
B_CELL_NAIVE_21
872.6
B_CELL_NAIVE_22
869.0
B_CELL_NAIVE_23
866.3
B_CELL_NAIVE_24
856.1
B_CELL_NAIVE_25
855.9
B_CELL_NAIVE_26
851.0
B_CELL_NAIVE_27
848.2
B_CELL_NAIVE_28
834.9
B_CELL_NAIVE_29
822.3
B_CELL_NAIVE_30
818.3
B_CELL_NAIVE_31
815.3
B_CELL_NAIVE_32
812.3
B_CELL_NAIVE_33
807.7
B_CELL_NAIVE_34
807.6
B_CELL_NAIVE_35
798.8
B_CELL_NAIVE_36
798.3
B_CELL_NAIVE_37
782.1
B_CELL_NAIVE_38
781.5
B_CELL_NAIVE_39
770.9
B_CELL_NAIVE_40
765.8
B_CELL_NAIVE_41
757.4
B_CELL_NAIVE_42
756.3
B_CELL_NAIVE_43
755.1
B_CELL_NAIVE_44
750.3
B_CELL_NAIVE_45
750.0
B_CELL_NAIVE_46
746.5
B_CELL_NAIVE_47
746.3
B_CELL_NAIVE_48
746.2
B_CELL_NAIVE_49
739.7
B_CELL_NAIVE_50
734.9
B_CELL_NAIVE_51
724.8
B_CELL_NAIVE_52
722.5
B_CELL_NAIVE_53
718.3
B_CELL_NAIVE_54
714.1
B_CELL_NAIVE_55
700.0
B_CELL_NAIVE_56
697.2
B_CELL_NAIVE_57
696.3
B_CELL_NAIVE_58
690.8
B_CELL_NAIVE_59
688.9
B_CELL_NAIVE_60
688.1
B_CELL_NAIVE_61
653.7
B_CELL_NAIVE_62
652.6
B_CELL_NAIVE_63
650.7
B_CELL_NAIVE_64
644.3
B_CELL_NAIVE_65
636.0
B_CELL_NAIVE_66
633.9
B_CELL_NAIVE_67
633.0
B_CELL_NAIVE_68
629.6
B_CELL_NAIVE_69
603.3
B_CELL_NAIVE_70
602.4
B_CELL_NAIVE_71
583.5
B_CELL_NAIVE_72
576.0
B_CELL_NAIVE_73
571.8
B_CELL_NAIVE_74
553.4
B_CELL_NAIVE_75
529.3
B_CELL_NAIVE_76
524.2
B_CELL_NAIVE_77
490.0
B_CELL_NAIVE_78
484.5
B_CELL_NAIVE_79
469.6
B_CELL_NAIVE_80
440.3
B_CELL_NAIVE_81
437.5
B_CELL_NAIVE_82
429.9
B_CELL_NAIVE_83
423.7
B_CELL_NAIVE_84
400.9
B_CELL_NAIVE_85
384.4
B_CELL_NAIVE_86
337.9
B_CELL_NAIVE_87
322.0
B_CELL_NAIVE_88
315.9
B_CELL_NAIVE_89
273.5
B_CELL_NAIVE_90
256.3
B_CELL_NAIVE_91
225.5
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