A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1190.4
nTPM
Monaco:
194.1
nTPM
Schmiedel:
519.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1190.4
HPA sample
nTPM
NK-cell nTPM: 1190.4
Samples: 6
Max nTPM: 1348.6
Min nTPM: 843.4
P10809_1013
1029.4
P10809_1033
1310.9
P10809_1052
1298.0
P10809_1071
1312.0
P10809_1093
843.4
P10809_1103
1348.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
194.1
Monaco sample
nTPM
NK-cell nTPM: 194.1
Samples: 4
Max nTPM: 250.1
Min nTPM: 140.6
RHH5316_R3683
250.1
RHH5224_R3596
140.6
RHH5253_R3625
186.8
RHH5282_R3654
199.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
519.0
Schmiedel sample id
TPM
NK-cell TPM: 519.0
Samples: 90
Max TPM: 917.9
Min TPM: 228.5
NK_1
917.9
NK_2
758.3
NK_3
730.6
NK_4
723.7
NK_5
718.5
NK_6
710.8
NK_7
702.7
NK_8
687.4
NK_9
682.0
NK_10
677.8
NK_11
675.3
NK_12
672.7
NK_13
667.7
NK_14
665.2
NK_15
649.8
NK_16
648.5
NK_17
641.4
NK_18
634.9
NK_19
633.4
NK_20
633.2
NK_21
633.2
NK_22
628.6
NK_23
628.6
NK_24
626.5
NK_25
615.8
NK_26
612.4
NK_27
599.4
NK_28
575.9
NK_29
574.7
NK_30
567.7
NK_31
567.4
NK_32
560.3
NK_33
555.2
NK_34
554.0
NK_35
549.6
NK_36
547.3
NK_37
539.1
NK_38
537.4
NK_39
537.1
NK_40
534.8
NK_41
529.9
NK_42
529.4
NK_43
520.9
NK_44
514.6
NK_45
510.6
NK_46
507.2
NK_47
507.2
NK_48
505.8
NK_49
500.2
NK_50
497.4
NK_51
494.7
NK_52
486.9
NK_53
486.2
NK_54
485.1
NK_55
485.0
NK_56
482.5
NK_57
481.6
NK_58
478.5
NK_59
476.9
NK_60
476.9
NK_61
471.6
NK_62
469.5
NK_63
467.3
NK_64
455.3
NK_65
448.5
NK_66
448.3
NK_67
435.9
NK_68
432.9
NK_69
431.7
NK_70
429.3
NK_71
422.5
NK_72
417.9
NK_73
417.1
NK_74
403.5
NK_75
399.3
NK_76
390.0
NK_77
364.2
NK_78
360.3
NK_79
359.2
NK_80
350.1
NK_81
345.6
NK_82
337.8
NK_83
337.3
NK_84
323.3
NK_85
311.5
NK_86
310.8
NK_87
306.2
NK_88
254.2
NK_89
244.7
NK_90
228.5
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