On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
286.6
nTPM
HPA Brain:
540.3
nTPM
GTEx:
286.6
nTPM
FANTOM5:
144.2
Scaled Tags Per Million
Macaque:
267.1
nTPM
Mouse:
1008.4
nTPM
Rat:
691.6
nTPM
Pig:
343.1
nTPM
AMYGDALA - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - AMYGDALA, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RXFP1+ ...
c-2
Excitatory (VGLUT1/2)
c-3
Inhibitory (GAD1/2) CXCL14+...
c-4
Excitatory (VGLUT1/2)
c-5
Excitatory (VGLUT1/2)
c-6
Inhibitory (GAD1/2) CXCL14+...
c-7
Excitatory (VGLUT1/2)
c-8
Excitatory (VGLUT1/2)
c-9
Excitatory (VGLUT1)
c-10
Excitatory (VGLUT1)
c-11
Inhibitory (GAD1/2)
c-12
Inhibitory (GAD1/2) SST+ LH...
c-13
Excitatory (VGLUT2)
c-14
Inhibitory (GAD1/2) KIT+ LA...
c-15
Inhibitory (GAD1/2) TAC1+ L...
c-16
Excitatory (VGLUT1/2)
c-17
Inhibitory (GAD1/2) TSHZ1+
c-18
Excitatory (VGLUT1/2)
c-19
Inhibitory (GAD1/2) CXCL14+...
c-20
Excitatory (VGLUT1/2)
c-21
Excitatory (VGLUT1/2)
c-22
Excitatory (VGLUT1)
c-23
Unassigned
c-24
Inhibitory (GAD1/2) PENK+ D...
c-25
Excitatory (VGLUT1/2)
c-26
Inhibitory (GAD1/2) CXCL14+...
c-27
Inhibitory (GAD1/2) LHX6+ E...
c-28
Excitatory (VGLUT1/2) SATB2...
c-29
Inhibitory (GAD1) LHX6+
c-30
Excitatory (VGLUT1/2)
c-31
Excitatory (VGLUT1/2)
c-32
Excitatory (VGLUT1)
c-33
Inhibitory (GAD1/2) TAC1+ P...
c-34
Excitatory (VGLUT1/2)
c-35
Excitatory (VGLUT1/2) ETV1+...
c-36
Inhibitory (GAD1/2) PENK+
c-37
Excitatory (VGLUT1/2)
c-38
Excitatory (VGLUT1) FOXP2+
c-39
Excitatory (VGLUT1/2)
c-40
Excitatory (VGLUT1) SOX5+
c-41
Inhibitory (GAD1/2) NOS1+ M...
c-42
Inhibitory (GAD1/2) NOS1+ S...
c-43
Excitatory (VGLUT1/2) ETV1+
c-44
Excitatory (VGLUT1/2) NOS1+
c-45
Excitatory (VGLUT2)
c-46
Excitatory (VGLUT1)
c-47
Serotonergic Inhibitory (GA...
c-48
Excitatory (VGLUT1) FOXP2+ ...
c-49
Excitatory (VGLUT1)
c-50
Inhibitory (GAD1/2) RORB+ K
c-51
CALB2+
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - AMYGDALA, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Astrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocyte progenitor ...
c-7
Microglia
c-8
Oligodendrocytes
c-9
Astrocytes
c-10
Astrocytes (CD44+)
c-11
Microglia
c-12
Oligodendrocyte progenitor ...
c-13
Astrocytes
c-14
Oligodendrocytes
c-15
Astrocytes
c-16
Oligodendrocytes
c-17
Oligodendrocytes
c-18
Fibroblasts
c-19
Ependymal cells
c-20
Mural cells & vECs
c-21
Macrophages
c-22
Immature oligodendrocytes
c-23
Pericytes
c-24
NK-cells & T-cells
c-25
Oligodendrocyte progenitor ...
c-26
Vascular smooth muscle cell
c-27
Fibroblasts (BNC2+ KCNMA1+ ...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
540.3
Sample id
Sample description
nTPM
Basal amygdala nTPM: 457.8
2685
Female, age 94, left hemisphere
605.4
2110
Male, age 80, left hemisphere
537.5
1955
Male, age 76, both hemispheres
483.9
2827
Female, age 67, right hemisphere
444.9
2609
Male, age 75, right hemisphere
363.0
2243
Female, age 91, right hemisphere
312.2
Central amygdala nTPM: 453.8
1905
Male, age 76, both hemispheres
532.9
2826
Female, age 94, left hemisphere
515.5
2239
Male, age 80, left hemisphere
474.4
2701
Female, age 91, right hemisphere
377.9
2515
Male, age 75, right hemisphere
368.5
Corticomedial amygdala nTPM: 380.4
2429
Female, age 94, left hemisphere
483.0
2829
Male, age 80, left hemisphere
416.9
2240
Male, age 76, both hemispheres
383.8
2428
Male, age 75, right hemisphere
368.4
2535
Female, age 67, right hemisphere
358.0
2242
Female, age 91, right hemisphere
272.1
Lateral amygdala nTPM: 540.3
2534
Female, age 94, left hemisphere
651.7
1883
Male, age 76, both hemispheres
601.5
2830
Female, age 67, right hemisphere
535.7
2516
Male, age 75, right hemisphere
529.8
2256
Male, age 80, left hemisphere
524.0
2255
Female, age 91, right hemisphere
399.1
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
286.6
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 286.6
Samples: 181
Max nTPM: 682.6
Min nTPM: 85.1
Std nTPM: 110.8
Median nTPM: 269.7
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
682.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
637.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
604.4
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
579.5
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
551.8
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
521.5
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
519.1
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
507.9
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
502.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
501.2
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
487.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
479.4
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
474.4
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
474.0
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
463.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
456.9
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
449.8
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
446.1
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
445.3
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
430.7
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
426.4
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
425.1
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
424.1
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
420.2
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
415.4
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
401.6
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
390.4
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
390.2
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
387.9
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
385.0
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
383.5
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
382.7
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
375.0
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
372.4
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
371.3
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
369.7
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
366.9
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
363.7
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
362.5
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
360.5
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
359.9
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
357.8
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
351.6
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
347.9
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
346.9
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
344.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
344.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
340.3
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
339.2
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
339.1
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
338.3
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
335.9
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
329.8
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
329.2
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
328.3
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
327.0
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
323.1
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
320.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
318.8
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
318.4
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
314.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
313.7
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
312.4
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
311.7
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
311.4
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
310.9
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
309.1
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
306.4
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
305.2
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
303.7
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
303.2
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
302.4
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
300.7
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
299.7
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
296.3
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
296.1
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
292.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
291.3
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
290.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
290.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
289.1
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
287.0
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
285.6
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
285.2
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
283.9
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
283.0
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
282.1
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
275.2
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
272.4
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
270.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
269.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
269.3
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
266.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
265.0
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
264.3
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
263.5
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
263.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
260.1
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
255.5
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
255.2
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
252.6
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
251.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
251.0
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
250.2
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
249.0
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
248.9
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
246.4
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
244.7
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
244.0
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
243.2
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
243.1
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
242.4
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
240.4
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
239.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
235.0
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
234.1
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
234.1
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
230.1
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
226.8
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
225.0
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
223.6
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
222.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
221.7
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
218.5
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
216.7
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
215.7
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
215.4
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
214.1
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
213.5
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
211.8
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
209.9
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
208.5
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
207.3
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
206.8
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
205.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
204.3
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
204.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
202.2
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
201.8
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
200.8
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
199.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
199.3
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
197.3
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
195.2
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
192.4
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
190.1
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
189.6
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
187.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
185.3
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
185.1
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
182.4
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
181.7
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
181.6
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
180.2
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
177.4
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
174.4
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
173.7
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
173.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
173.1
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
171.0
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
170.0
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
168.1
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
168.0
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
166.6
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
166.4
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
163.1
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
161.6
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
157.0
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
152.1
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
135.8
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
135.1
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
134.9
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
131.4
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
124.2
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
123.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
118.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
114.1
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
112.8
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
107.6
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
101.0
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
85.1
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
267.1
Macaque sample
Sample description
nTPM
Amygdala nTPM: 267.1
Samples: 2
Max nTPM: 285.4
Min nTPM: 248.8
Sample A
248.8
Sample B
285.4
AMYGDALA - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
343.1
Pig sample
Sample description
nTPM
Amygdala nTPM: 343.1
Samples: 4
Max nTPM: 456.9
Min nTPM: 287.1
Sample A
Female
456.9
Sample B
Female
309.5
Sample C
Male
287.1
Sample D
Male
318.9
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1008.4
Mouse sample
Sample description
nTPM
Amygdala nTPM: 1008.4
Samples: 4
Max nTPM: 1019.6
Min nTPM: 999.0
Sample A
1000.4
Sample B
1014.5
Sample C
1019.6
Sample D
999.0
AMYGDALA - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
691.6
Rat sample
Sample description
nTPM
Amygdala nTPM: 691.6
Samples: 4
Max nTPM: 756.8
Min nTPM: 567.6
Sample A
756.8
Sample A
731.4
Sample A
710.5
Sample A
567.6
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The Human Protein Atlas project is funded
