A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
18227.2
nTPM
Monaco:
1071.3
nTPM
Schmiedel:
661.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18227.2
HPA sample
nTPM
Memory B-cell nTPM: 18227.2
Samples: 6
Max nTPM: 32184.7
Min nTPM: 9995.5
P10809_1017
9995.5
P10809_1025
16609.5
P10809_1044
32184.7
P10809_1063
15845.2
P10809_1092
16401.5
P10809_1105
18327.0
Naive B-cell nTPM: 17900.4
Samples: 6
Max nTPM: 20870.1
Min nTPM: 12336.4
P10809_1011
12336.4
P10809_1029
18817.6
P10809_1048
20826.8
P10809_1067
17167.1
P10809_1091
17384.2
P10809_1104
20870.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1071.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 1071.3
Samples: 4
Max nTPM: 2210.1
Min nTPM: 265.0
RHH5310_R3677
831.6
RHH5218_R3590
265.0
RHH5247_R3619
2210.1
RHH5276_R3648
978.6
Naive B-cell nTPM: 1024.0
Samples: 4
Max nTPM: 1803.6
Min nTPM: 388.3
RHH5308_R3675
1088.1
RHH5216_R3588
388.3
RHH5245_R3617
1803.6
RHH5274_R3646
815.9
Non-switched memory B-cell nTPM: 769.5
Samples: 4
Max nTPM: 1139.8
Min nTPM: 409.7
RHH5309_R3676
1010.7
RHH5217_R3589
409.7
RHH5246_R3618
517.6
RHH5275_R3647
1139.8
Plasmablast nTPM: 795.8
Samples: 4
Max nTPM: 1068.9
Min nTPM: 483.8
RHH5312_R3679
1068.9
RHH5220_R3592
483.8
RHH5249_R3621
808.4
RHH5278_R3650
822.3
Switched memory B-cell nTPM: 661.7
Samples: 4
Max nTPM: 900.2
Min nTPM: 346.9
RHH5311_R3678
900.2
RHH5219_R3591
566.7
RHH5248_R3620
346.9
RHH5277_R3649
832.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
661.8
Schmiedel sample id
TPM
Naive B-cell TPM: 661.8
Samples: 91
Max TPM: 1136.9
Min TPM: 143.1
B_CELL_NAIVE_1
1136.9
B_CELL_NAIVE_2
1026.8
B_CELL_NAIVE_3
981.6
B_CELL_NAIVE_4
970.0
B_CELL_NAIVE_5
966.1
B_CELL_NAIVE_6
958.9
B_CELL_NAIVE_7
952.9
B_CELL_NAIVE_8
932.7
B_CELL_NAIVE_9
909.6
B_CELL_NAIVE_10
899.9
B_CELL_NAIVE_11
891.2
B_CELL_NAIVE_12
880.0
B_CELL_NAIVE_13
877.3
B_CELL_NAIVE_14
871.3
B_CELL_NAIVE_15
866.2
B_CELL_NAIVE_16
865.6
B_CELL_NAIVE_17
861.4
B_CELL_NAIVE_18
855.0
B_CELL_NAIVE_19
842.0
B_CELL_NAIVE_20
839.6
B_CELL_NAIVE_21
838.5
B_CELL_NAIVE_22
834.4
B_CELL_NAIVE_23
834.0
B_CELL_NAIVE_24
827.3
B_CELL_NAIVE_25
823.2
B_CELL_NAIVE_26
819.4
B_CELL_NAIVE_27
816.8
B_CELL_NAIVE_28
816.5
B_CELL_NAIVE_29
815.5
B_CELL_NAIVE_30
809.4
B_CELL_NAIVE_31
801.2
B_CELL_NAIVE_32
799.4
B_CELL_NAIVE_33
793.9
B_CELL_NAIVE_34
791.4
B_CELL_NAIVE_35
772.6
B_CELL_NAIVE_36
771.1
B_CELL_NAIVE_37
757.5
B_CELL_NAIVE_38
754.8
B_CELL_NAIVE_39
751.3
B_CELL_NAIVE_40
746.8
B_CELL_NAIVE_41
737.7
B_CELL_NAIVE_42
736.0
B_CELL_NAIVE_43
720.5
B_CELL_NAIVE_44
697.3
B_CELL_NAIVE_45
693.4
B_CELL_NAIVE_46
682.8
B_CELL_NAIVE_47
681.0
B_CELL_NAIVE_48
676.3
B_CELL_NAIVE_49
675.3
B_CELL_NAIVE_50
668.2
B_CELL_NAIVE_51
664.5
B_CELL_NAIVE_52
654.0
B_CELL_NAIVE_53
652.2
B_CELL_NAIVE_54
651.7
B_CELL_NAIVE_55
651.6
B_CELL_NAIVE_56
649.5
B_CELL_NAIVE_57
646.4
B_CELL_NAIVE_58
635.8
B_CELL_NAIVE_59
624.3
B_CELL_NAIVE_60
619.8
B_CELL_NAIVE_61
617.5
B_CELL_NAIVE_62
607.8
B_CELL_NAIVE_63
588.7
B_CELL_NAIVE_64
586.4
B_CELL_NAIVE_65
577.5
B_CELL_NAIVE_66
566.5
B_CELL_NAIVE_67
536.6
B_CELL_NAIVE_68
528.2
B_CELL_NAIVE_69
518.9
B_CELL_NAIVE_70
509.2
B_CELL_NAIVE_71
500.0
B_CELL_NAIVE_72
494.3
B_CELL_NAIVE_73
486.4
B_CELL_NAIVE_74
469.6
B_CELL_NAIVE_75
455.4
B_CELL_NAIVE_76
439.4
B_CELL_NAIVE_77
407.6
B_CELL_NAIVE_78
379.6
B_CELL_NAIVE_79
339.4
B_CELL_NAIVE_80
334.5
B_CELL_NAIVE_81
331.9
B_CELL_NAIVE_82
314.2
B_CELL_NAIVE_83
276.7
B_CELL_NAIVE_84
255.8
B_CELL_NAIVE_85
253.7
B_CELL_NAIVE_86
220.1
B_CELL_NAIVE_87
197.7
B_CELL_NAIVE_88
186.8
B_CELL_NAIVE_89
171.9
B_CELL_NAIVE_90
154.1
B_CELL_NAIVE_91
143.1
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