A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12128.2
nTPM
Monaco:
995.0
nTPM
Schmiedel:
744.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12128.2
HPA sample
nTPM
Classical monocyte nTPM: 5330.4
Samples: 6
Max nTPM: 8298.5
Min nTPM: 3833.9
P10809_1003
8298.5
P10809_1020
4264.7
P10809_1039
5144.7
P10809_1058
4287.1
P10809_1080
3833.9
P10809_1107
6153.5
Intermediate monocyte nTPM: 9571.1
Samples: 6
Max nTPM: 14601.1
Min nTPM: 5159.7
P10809_1004
8439.0
P10809_1023
12281.9
P10809_1042
10298.6
P10809_1061
5159.7
P10809_1081
6646.4
P10809_1108
14601.1
Non-classical monocyte nTPM: 12128.2
Samples: 5
Max nTPM: 17745.4
Min nTPM: 8446.0
P10809_1005
11822.5
P10809_1053
11820.8
P10809_1072
8446.0
P10809_1082
10806.4
P10809_1109
17745.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
995.0
Monaco sample
nTPM
Classical monocyte nTPM: 249.7
Samples: 4
Max nTPM: 332.6
Min nTPM: 197.8
RHH5313_R3680
332.6
RHH5221_R3593
227.2
RHH5250_R3622
197.8
RHH5279_R3651
241.4
Intermediate monocyte nTPM: 995.1
Samples: 4
Max nTPM: 1429.7
Min nTPM: 474.4
RHH5314_R3681
911.8
RHH5222_R3594
1429.7
RHH5251_R3623
1164.3
RHH5280_R3652
474.4
Non-classical monocyte nTPM: 888.8
Samples: 4
Max nTPM: 1198.0
Min nTPM: 467.2
RHH5315_R3682
1198.0
RHH5223_R3595
1049.0
RHH5252_R3624
840.9
RHH5281_R3653
467.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
744.2
Schmiedel sample id
TPM
Classical monocyte TPM: 303.6
Samples: 91
Max TPM: 468.8
Min TPM: 162.8
MONOCYTES_1
468.8
MONOCYTES_2
434.5
MONOCYTES_3
431.1
MONOCYTES_4
424.7
MONOCYTES_5
414.5
MONOCYTES_6
413.2
MONOCYTES_7
404.2
MONOCYTES_8
385.3
MONOCYTES_9
374.2
MONOCYTES_10
374.1
MONOCYTES_11
370.7
MONOCYTES_12
368.9
MONOCYTES_13
367.0
MONOCYTES_14
364.3
MONOCYTES_15
362.6
MONOCYTES_16
362.0
MONOCYTES_17
361.8
MONOCYTES_18
361.3
MONOCYTES_19
356.7
MONOCYTES_20
355.9
MONOCYTES_21
354.2
MONOCYTES_22
353.1
MONOCYTES_23
352.9
MONOCYTES_24
352.7
MONOCYTES_25
352.5
MONOCYTES_26
346.2
MONOCYTES_27
345.4
MONOCYTES_28
345.3
MONOCYTES_29
343.2
MONOCYTES_30
340.3
MONOCYTES_31
337.3
MONOCYTES_32
334.9
MONOCYTES_33
333.9
MONOCYTES_34
331.7
MONOCYTES_35
330.8
MONOCYTES_36
327.9
MONOCYTES_37
327.6
MONOCYTES_38
326.8
MONOCYTES_39
325.6
MONOCYTES_40
320.1
MONOCYTES_41
319.9
MONOCYTES_42
317.3
MONOCYTES_43
312.4
MONOCYTES_44
311.9
MONOCYTES_45
311.3
MONOCYTES_46
309.9
MONOCYTES_47
306.4
MONOCYTES_48
305.6
MONOCYTES_49
303.4
MONOCYTES_50
302.5
MONOCYTES_51
298.7
MONOCYTES_52
297.9
MONOCYTES_53
295.4
MONOCYTES_54
294.6
MONOCYTES_55
293.2
MONOCYTES_56
289.2
MONOCYTES_57
288.4
MONOCYTES_58
285.4
MONOCYTES_59
283.4
MONOCYTES_60
281.6
MONOCYTES_61
274.0
MONOCYTES_62
272.4
MONOCYTES_63
272.2
MONOCYTES_64
269.2
MONOCYTES_65
266.9
MONOCYTES_66
264.0
MONOCYTES_67
261.1
MONOCYTES_68
260.5
MONOCYTES_69
257.2
MONOCYTES_70
255.3
MONOCYTES_71
252.3
MONOCYTES_72
245.3
MONOCYTES_73
245.3
MONOCYTES_74
240.3
MONOCYTES_75
239.8
MONOCYTES_76
235.4
MONOCYTES_77
234.8
MONOCYTES_78
224.4
MONOCYTES_79
221.6
MONOCYTES_80
216.3
MONOCYTES_81
211.3
MONOCYTES_82
207.1
MONOCYTES_83
196.8
MONOCYTES_84
196.8
MONOCYTES_85
194.8
MONOCYTES_86
189.5
MONOCYTES_87
184.6
MONOCYTES_88
182.5
MONOCYTES_89
181.1
MONOCYTES_90
166.9
MONOCYTES_91
162.8
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Non-classical monocyte TPM: 744.2
Samples: 90
Max TPM: 1327.0
Min TPM: 232.2
M2_1
1327.0
M2_2
1240.9
M2_3
1205.3
M2_4
1192.6
M2_5
1151.4
M2_6
1144.3
M2_7
1122.0
M2_8
1101.6
M2_9
1090.5
M2_10
1076.7
M2_11
1048.1
M2_12
1037.8
M2_13
1022.0
M2_14
996.4
M2_15
993.4
M2_16
988.9
M2_17
982.9
M2_18
969.9
M2_19
953.0
M2_20
948.5
M2_21
936.0
M2_22
929.2
M2_23
926.0
M2_24
919.8
M2_25
914.3
M2_26
913.8
M2_27
911.4
M2_28
879.0
M2_29
845.8
M2_30
845.4
M2_31
833.2
M2_32
821.0
M2_33
820.0
M2_34
816.4
M2_35
813.3
M2_36
809.1
M2_37
804.0
M2_38
797.6
M2_39
796.5
M2_40
794.4
M2_41
790.0
M2_42
784.8
M2_43
758.7
M2_44
756.5
M2_45
752.3
M2_46
751.8
M2_47
748.3
M2_48
745.4
M2_49
741.4
M2_50
725.3
M2_51
722.2
M2_52
720.6
M2_53
720.4
M2_54
702.3
M2_55
676.6
M2_56
675.1
M2_57
661.2
M2_58
655.7
M2_59
649.3
M2_60
632.5
M2_61
622.5
M2_62
620.0
M2_63
613.3
M2_64
608.7
M2_65
602.0
M2_66
579.6
M2_67
578.4
M2_68
556.1
M2_69
554.1
M2_70
539.8
M2_71
526.2
M2_72
514.5
M2_73
513.4
M2_74
506.7
M2_75
497.0
M2_76
477.7
M2_77
460.7
M2_78
441.5
M2_79
425.5
M2_80
413.2
M2_81
395.2
M2_82
394.9
M2_83
393.8
M2_84
385.8
M2_85
382.1
M2_86
299.6
M2_87
264.3
M2_88
245.1
M2_89
243.4
M2_90
232.2
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