A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12087.3
nTPM
Monaco:
364.5
nTPM
Schmiedel:
493.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12087.3
HPA sample
nTPM
NK-cell nTPM: 12087.3
Samples: 6
Max nTPM: 16292.2
Min nTPM: 5941.6
P10809_1013
7114.6
P10809_1033
16292.2
P10809_1052
13201.1
P10809_1071
14584.9
P10809_1093
5941.6
P10809_1103
15389.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
364.5
Monaco sample
nTPM
NK-cell nTPM: 364.5
Samples: 4
Max nTPM: 407.7
Min nTPM: 301.6
RHH5316_R3683
407.7
RHH5224_R3596
301.6
RHH5253_R3625
370.5
RHH5282_R3654
378.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
493.6
Schmiedel sample id
TPM
NK-cell TPM: 493.6
Samples: 90
Max TPM: 857.5
Min TPM: 169.0
NK_1
857.5
NK_2
823.9
NK_3
795.6
NK_4
789.4
NK_5
756.0
NK_6
719.4
NK_7
719.2
NK_8
700.9
NK_9
676.2
NK_10
657.8
NK_11
652.4
NK_12
649.9
NK_13
649.4
NK_14
648.8
NK_15
641.3
NK_16
629.7
NK_17
628.9
NK_18
628.7
NK_19
625.8
NK_20
624.3
NK_21
618.2
NK_22
615.1
NK_23
614.0
NK_24
599.2
NK_25
598.4
NK_26
597.5
NK_27
585.7
NK_28
581.1
NK_29
575.2
NK_30
574.3
NK_31
573.8
NK_32
567.9
NK_33
560.9
NK_34
559.9
NK_35
558.9
NK_36
558.2
NK_37
550.6
NK_38
549.2
NK_39
546.8
NK_40
536.5
NK_41
522.1
NK_42
521.4
NK_43
518.5
NK_44
507.4
NK_45
505.2
NK_46
503.7
NK_47
502.7
NK_48
498.4
NK_49
478.8
NK_50
474.8
NK_51
465.5
NK_52
461.9
NK_53
461.7
NK_54
458.6
NK_55
443.1
NK_56
435.1
NK_57
433.4
NK_58
430.3
NK_59
429.8
NK_60
416.5
NK_61
410.0
NK_62
406.2
NK_63
406.0
NK_64
405.0
NK_65
404.9
NK_66
404.5
NK_67
399.3
NK_68
395.1
NK_69
385.6
NK_70
363.2
NK_71
362.2
NK_72
360.5
NK_73
355.7
NK_74
339.7
NK_75
333.5
NK_76
319.8
NK_77
315.9
NK_78
301.7
NK_79
299.8
NK_80
291.7
NK_81
290.3
NK_82
275.3
NK_83
254.4
NK_84
242.7
NK_85
237.7
NK_86
214.6
NK_87
212.9
NK_88
212.6
NK_89
192.1
NK_90
169.0
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