MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:141.9 nTPM
HPA Brain:429.7 nTPM
GTEx:141.9 nTPM
FANTOM5:27.6 Scaled Tags Per Million
Pig:744.1 nTPM
Mouse:929.4 nTPM
Allen mouse:19.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 429.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 316.6
2666 Male, age 74, left hemisphere 476.0
2219 Male, age 76, both hemispheres 413.5
2019 Male, age 18, unknown 392.8
1827 Male, age 72, unknown 345.0
2411 Female, age 72, unknown 337.2
2828 Female, age 72, unknown 281.4
1870 Female, age 42, unknown 255.4
1833 Male, age 53, unknown 252.6
1830 Male, age 51, unknown 223.6
2586 Male, age 75, left hemisphere 188.8
Dorsal raphe nucleus
nTPM: 321.3
2298 Female, age 72, unknown 426.1
1828 Male, age 53, unknown 359.5
2047 Male, age 72, unknown 334.8
2750 Male, age 76, both hemispheres 298.1
2016 Female, age 72, unknown 188.1
Inferior colliculus
nTPM: 350.5
2097 Female, age 72, unknown 438.1
1848 Female, age 42, unknown 354.3
1890 Male, age 53, unknown 333.7
2849 Male, age 72, unknown 275.9
Median raphe nucleus
nTPM: 429.7
2220 Male, age 76, midline 429.7
Periaquaductal grey, anterior
nTPM: 320.1
1795 Male, age 51, unknown 335.4
1947 Male, age 18, unknown 322.2
2502 Female, age 75, unknown 302.6
Periaquaductal grey, dorsal
nTPM: 251.2
1831 Male, age 72, unknown 291.2
2464 Female, age 72, unknown 248.3
1840 Male, age 53, unknown 243.3
2850 Male, age 76, both hemispheres 221.9
Periaquaductal grey, lateral
nTPM: 198.7
2140 Male, age 76, both hemispheres 213.1
2053 Male, age 18, unknown 210.2
2272 Male, age 74, both hemispheres 172.7
Pretectal area
nTPM: 411.6
2667 Female, age 75, unknown 763.9
1944 Female, age 72, unknown 624.1
1816 Male, age 51, unknown 564.4
1817 Female, age 42, unknown 561.0
2007 Male, age 72, unknown 533.1
1815 Male, age 53, unknown 367.6
2224 Female, age 72, unknown 317.7
2316 Male, age 76, right hemisphere 242.5
2825 Male, age 18, unknown 228.2
2407 Male, age 75, both hemispheres 193.2
2273 Male, age 74, both hemispheres 131.6
Red nucleus
nTPM: 240.6
2785 Male, age 18, unknown 356.5
1821 Female, age 72, unknown 332.8
2823 Male, age 76, right hemisphere 269.1
1954 Female, age 42, unknown 267.5
2227 Male, age 72, unknown 236.0
2769 Male, age 72, unknown 235.1
2584 Male, age 75, left hemisphere 234.0
1865 Male, age 51, unknown 226.6
2503 Female, age 72, unknown 222.8
1904 Male, age 53, unknown 220.5
2588 Male, age 74, left hemisphere 183.4
2725 Female, age 75, unknown 102.4
Substantia nigra
nTPM: 380.5
1916 Female, age 42, unknown 575.9
1941 Male, age 53, unknown 569.4
2665 Male, age 74, both hemispheres 525.7
1889 Female, age 72, unknown 507.2
1851 Male, age 51, unknown 382.8
2241 Male, age 72, unknown 308.8
2409 Female, age 72, unknown 298.8
2699 Male, age 18, unknown 247.6
2583 Male, age 75, right hemisphere 221.3
2590 Female, age 75, unknown 168.0
Superior colliculus
nTPM: 344.4
2668 Female, age 75, unknown 737.0
2087 Female, age 72, unknown 503.7
1895 Male, age 76, right hemisphere 399.6
1796 Male, age 53, unknown 333.8
2261 Male, age 18, unknown 331.4
1839 Male, age 51, unknown 271.6
1913 Female, age 42, unknown 241.6
2664 Male, age 75, both hemispheres 234.5
1995 Male, age 72, unknown 205.2
2587 Male, age 74, left hemisphere 186.0
Ventral tegmental area
nTPM: 355.3
2218 Male, age 76, both hemispheres 498.3
2410 Female, age 72, unknown 447.6
1915 Female, age 42, unknown 427.1
1942 Male, age 51, unknown 304.3
2223 Female, age 72, unknown 230.1
2021 Male, age 53, unknown 224.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 141.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 141.9
Samples: 183

Max nTPM: 1202.8
Min nTPM: 1.7
Std nTPM: 165.0
Median nTPM: 80.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1202.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 849.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 541.2
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 528.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 506.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 489.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 458.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 453.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 446.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 417.4
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 415.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 27.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.6
FF:10158-103A5 76 years, female 27.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 744.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 431.5
Samples: 4

Max nTPM: 672.6
Min nTPM: 130.1
Sample A Female 672.6
Sample B Female 272.1
Sample C Male 651.1
Sample D Male 130.1
Midbrain
nTPM: 555.5
Samples: 4

Max nTPM: 1035.1
Min nTPM: 113.6
Sample A Female 113.6
Sample B Female 285.1
Sample C Male 1035.1
Sample D Male 788.1
Periaqueductal gray
nTPM: 326.6
Samples: 3

Max nTPM: 426.4
Min nTPM: 265.7
Sample B Female 287.8
Sample C Male 426.4
Sample D Male 265.7
Superior colliculi
nTPM: 744.2
Samples: 4

Max nTPM: 1092.7
Min nTPM: 328.2
Sample A Female 809.5
Sample B Female 328.2
Sample C Male 1092.7
Sample D Male 746.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 929.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 929.5
Samples: 4

Max nTPM: 1007.5
Min nTPM: 867.2
Sample A Male 867.2
Sample B Male 911.2
Sample C Female 1007.5
Sample D Female 932.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 19.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 19.9
70539163 Antisense, RP_050324_02_A06, Mouse strain C57BL/6J (56 days, male) 21.0
74881263 Antisense, RP_060315_01_A02, Mouse strain C57BL/6J (56 days, male) 18.7

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