A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15506.2
nTPM
Monaco:
1337.6
nTPM
Schmiedel:
98.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15506.2
HPA sample
nTPM
Memory B-cell nTPM: 15057.1
Samples: 6
Max nTPM: 29083.5
Min nTPM: 8075.0
P10809_1017
8075.0
P10809_1025
12809.5
P10809_1044
29083.5
P10809_1063
13873.3
P10809_1092
13313.3
P10809_1105
13188.2
Naive B-cell nTPM: 15506.2
Samples: 6
Max nTPM: 22223.2
Min nTPM: 9722.3
P10809_1011
9722.3
P10809_1029
14222.9
P10809_1048
22223.2
P10809_1067
15587.1
P10809_1091
14965.0
P10809_1104
16316.8
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1337.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 1337.6
Samples: 4
Max nTPM: 2907.0
Min nTPM: 424.5
RHH5310_R3677
993.2
RHH5218_R3590
424.5
RHH5247_R3619
2907.0
RHH5276_R3648
1025.5
Naive B-cell nTPM: 1169.9
Samples: 4
Max nTPM: 1694.3
Min nTPM: 737.9
RHH5308_R3675
1374.8
RHH5216_R3588
737.9
RHH5245_R3617
1694.3
RHH5274_R3646
872.7
Non-switched memory B-cell nTPM: 942.5
Samples: 4
Max nTPM: 1133.1
Min nTPM: 579.4
RHH5309_R3676
1133.1
RHH5217_R3589
579.4
RHH5246_R3618
1047.9
RHH5275_R3647
1009.4
Plasmablast nTPM: 818.6
Samples: 4
Max nTPM: 999.8
Min nTPM: 602.2
RHH5312_R3679
846.8
RHH5220_R3592
602.2
RHH5249_R3621
999.8
RHH5278_R3650
825.6
Switched memory B-cell nTPM: 846.9
Samples: 4
Max nTPM: 1283.0
Min nTPM: 561.4
RHH5311_R3678
1283.0
RHH5219_R3591
702.1
RHH5248_R3620
561.4
RHH5277_R3649
840.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
98.8
Schmiedel sample id
TPM
Naive B-cell TPM: 98.8
Samples: 91
Max TPM: 160.7
Min TPM: 26.8
B_CELL_NAIVE_1
160.7
B_CELL_NAIVE_2
156.8
B_CELL_NAIVE_3
156.5
B_CELL_NAIVE_4
151.6
B_CELL_NAIVE_5
151.5
B_CELL_NAIVE_6
149.5
B_CELL_NAIVE_7
148.5
B_CELL_NAIVE_8
142.4
B_CELL_NAIVE_9
140.7
B_CELL_NAIVE_10
140.0
B_CELL_NAIVE_11
137.8
B_CELL_NAIVE_12
137.5
B_CELL_NAIVE_13
136.6
B_CELL_NAIVE_14
136.2
B_CELL_NAIVE_15
132.3
B_CELL_NAIVE_16
130.5
B_CELL_NAIVE_17
129.4
B_CELL_NAIVE_18
126.7
B_CELL_NAIVE_19
126.3
B_CELL_NAIVE_20
126.3
B_CELL_NAIVE_21
126.3
B_CELL_NAIVE_22
125.9
B_CELL_NAIVE_23
125.4
B_CELL_NAIVE_24
124.2
B_CELL_NAIVE_25
123.7
B_CELL_NAIVE_26
123.2
B_CELL_NAIVE_27
122.0
B_CELL_NAIVE_28
118.5
B_CELL_NAIVE_29
117.9
B_CELL_NAIVE_30
117.5
B_CELL_NAIVE_31
117.3
B_CELL_NAIVE_32
113.3
B_CELL_NAIVE_33
112.3
B_CELL_NAIVE_34
110.1
B_CELL_NAIVE_35
109.7
B_CELL_NAIVE_36
108.6
B_CELL_NAIVE_37
108.1
B_CELL_NAIVE_38
106.8
B_CELL_NAIVE_39
106.6
B_CELL_NAIVE_40
104.6
B_CELL_NAIVE_41
103.7
B_CELL_NAIVE_42
103.4
B_CELL_NAIVE_43
101.8
B_CELL_NAIVE_44
101.5
B_CELL_NAIVE_45
101.0
B_CELL_NAIVE_46
100.0
B_CELL_NAIVE_47
98.5
B_CELL_NAIVE_48
97.9
B_CELL_NAIVE_49
97.7
B_CELL_NAIVE_50
94.3
B_CELL_NAIVE_51
93.5
B_CELL_NAIVE_52
93.4
B_CELL_NAIVE_53
93.2
B_CELL_NAIVE_54
93.0
B_CELL_NAIVE_55
93.0
B_CELL_NAIVE_56
92.2
B_CELL_NAIVE_57
91.7
B_CELL_NAIVE_58
89.2
B_CELL_NAIVE_59
88.2
B_CELL_NAIVE_60
87.8
B_CELL_NAIVE_61
86.5
B_CELL_NAIVE_62
85.5
B_CELL_NAIVE_63
83.6
B_CELL_NAIVE_64
82.1
B_CELL_NAIVE_65
80.4
B_CELL_NAIVE_66
78.7
B_CELL_NAIVE_67
78.5
B_CELL_NAIVE_68
76.5
B_CELL_NAIVE_69
76.2
B_CELL_NAIVE_70
75.8
B_CELL_NAIVE_71
73.9
B_CELL_NAIVE_72
71.8
B_CELL_NAIVE_73
70.5
B_CELL_NAIVE_74
70.1
B_CELL_NAIVE_75
67.7
B_CELL_NAIVE_76
67.6
B_CELL_NAIVE_77
65.9
B_CELL_NAIVE_78
59.1
B_CELL_NAIVE_79
56.7
B_CELL_NAIVE_80
56.3
B_CELL_NAIVE_81
56.1
B_CELL_NAIVE_82
55.3
B_CELL_NAIVE_83
52.1
B_CELL_NAIVE_84
46.5
B_CELL_NAIVE_85
45.6
B_CELL_NAIVE_86
41.0
B_CELL_NAIVE_87
40.8
B_CELL_NAIVE_88
40.0
B_CELL_NAIVE_89
37.2
B_CELL_NAIVE_90
30.5
B_CELL_NAIVE_91
26.8
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