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BETA
  • SUMMARY

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  • RPL18A
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:15506.2 nTPM
Monaco:1337.6 nTPM
Schmiedel:98.8 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

15506.2
HPA sample nTPM
Memory B-cell
nTPM: 15057.1
Samples: 6

Max nTPM: 29083.5
Min nTPM: 8075.0
P10809_1017 8075.0
P10809_1025 12809.5
P10809_1044 29083.5
P10809_1063 13873.3
P10809_1092 13313.3
P10809_1105 13188.2
Naive B-cell
nTPM: 15506.2
Samples: 6

Max nTPM: 22223.2
Min nTPM: 9722.3
P10809_1011 9722.3
P10809_1029 14222.9
P10809_1048 22223.2
P10809_1067 15587.1
P10809_1091 14965.0
P10809_1104 16316.8

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

1337.6
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 1337.6
Samples: 4

Max nTPM: 2907.0
Min nTPM: 424.5
RHH5310_R3677 993.2
RHH5218_R3590 424.5
RHH5247_R3619 2907.0
RHH5276_R3648 1025.5
Naive B-cell
nTPM: 1169.9
Samples: 4

Max nTPM: 1694.3
Min nTPM: 737.9
RHH5308_R3675 1374.8
RHH5216_R3588 737.9
RHH5245_R3617 1694.3
RHH5274_R3646 872.7
Non-switched memory B-cell
nTPM: 942.5
Samples: 4

Max nTPM: 1133.1
Min nTPM: 579.4
RHH5309_R3676 1133.1
RHH5217_R3589 579.4
RHH5246_R3618 1047.9
RHH5275_R3647 1009.4
Plasmablast
nTPM: 818.6
Samples: 4

Max nTPM: 999.8
Min nTPM: 602.2
RHH5312_R3679 846.8
RHH5220_R3592 602.2
RHH5249_R3621 999.8
RHH5278_R3650 825.6
Switched memory B-cell
nTPM: 846.9
Samples: 4

Max nTPM: 1283.0
Min nTPM: 561.4
RHH5311_R3678 1283.0
RHH5219_R3591 702.1
RHH5248_R3620 561.4
RHH5277_R3649 840.9

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

98.8
Schmiedel sample id TPM
Naive B-cell
TPM: 98.8
Samples: 91

Max TPM: 160.7
Min TPM: 26.8
B_CELL_NAIVE_1 160.7
B_CELL_NAIVE_2 156.8
B_CELL_NAIVE_3 156.5
B_CELL_NAIVE_4 151.6
B_CELL_NAIVE_5 151.5
B_CELL_NAIVE_6 149.5
B_CELL_NAIVE_7 148.5
B_CELL_NAIVE_8 142.4
B_CELL_NAIVE_9 140.7
B_CELL_NAIVE_10 140.0
B_CELL_NAIVE_11 137.8
B_CELL_NAIVE_12 137.5
B_CELL_NAIVE_13 136.6
B_CELL_NAIVE_14 136.2
B_CELL_NAIVE_15 132.3
B_CELL_NAIVE_16 130.5
B_CELL_NAIVE_17 129.4
B_CELL_NAIVE_18 126.7
B_CELL_NAIVE_19 126.3
B_CELL_NAIVE_20 126.3
B_CELL_NAIVE_21 126.3
B_CELL_NAIVE_22 125.9
B_CELL_NAIVE_23 125.4
B_CELL_NAIVE_24 124.2
B_CELL_NAIVE_25 123.7
B_CELL_NAIVE_26 123.2
B_CELL_NAIVE_27 122.0
B_CELL_NAIVE_28 118.5
B_CELL_NAIVE_29 117.9
B_CELL_NAIVE_30 117.5
B_CELL_NAIVE_31 117.3
B_CELL_NAIVE_32 113.3
B_CELL_NAIVE_33 112.3
B_CELL_NAIVE_34 110.1
B_CELL_NAIVE_35 109.7
B_CELL_NAIVE_36 108.6
B_CELL_NAIVE_37 108.1
B_CELL_NAIVE_38 106.8
B_CELL_NAIVE_39 106.6
B_CELL_NAIVE_40 104.6
B_CELL_NAIVE_41 103.7
B_CELL_NAIVE_42 103.4
B_CELL_NAIVE_43 101.8
B_CELL_NAIVE_44 101.5
B_CELL_NAIVE_45 101.0
B_CELL_NAIVE_46 100.0
B_CELL_NAIVE_47 98.5
B_CELL_NAIVE_48 97.9
B_CELL_NAIVE_49 97.7
B_CELL_NAIVE_50 94.3
B_CELL_NAIVE_51 93.5
B_CELL_NAIVE_52 93.4
B_CELL_NAIVE_53 93.2
B_CELL_NAIVE_54 93.0
B_CELL_NAIVE_55 93.0
B_CELL_NAIVE_56 92.2
B_CELL_NAIVE_57 91.7
B_CELL_NAIVE_58 89.2
B_CELL_NAIVE_59 88.2
B_CELL_NAIVE_60 87.8
B_CELL_NAIVE_61 86.5
B_CELL_NAIVE_62 85.5
B_CELL_NAIVE_63 83.6
B_CELL_NAIVE_64 82.1
B_CELL_NAIVE_65 80.4
B_CELL_NAIVE_66 78.7
B_CELL_NAIVE_67 78.5
B_CELL_NAIVE_68 76.5
B_CELL_NAIVE_69 76.2
B_CELL_NAIVE_70 75.8
B_CELL_NAIVE_71 73.9
B_CELL_NAIVE_72 71.8
B_CELL_NAIVE_73 70.5
B_CELL_NAIVE_74 70.1
B_CELL_NAIVE_75 67.7
B_CELL_NAIVE_76 67.6
B_CELL_NAIVE_77 65.9
B_CELL_NAIVE_78 59.1
B_CELL_NAIVE_79 56.7
B_CELL_NAIVE_80 56.3
B_CELL_NAIVE_81 56.1
B_CELL_NAIVE_82 55.3
B_CELL_NAIVE_83 52.1
B_CELL_NAIVE_84 46.5
B_CELL_NAIVE_85 45.6
B_CELL_NAIVE_86 41.0
B_CELL_NAIVE_87 40.8
B_CELL_NAIVE_88 40.0
B_CELL_NAIVE_89 37.2
B_CELL_NAIVE_90 30.5
B_CELL_NAIVE_91 26.8
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