A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4528.8
nTPM
Monaco:
540.8
nTPM
Schmiedel:
38.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4528.8
HPA sample
nTPM
Classical monocyte nTPM: 4524.1
Samples: 6
Max nTPM: 7140.9
Min nTPM: 3397.0
P10809_1003
7140.9
P10809_1020
3726.7
P10809_1039
4256.9
P10809_1058
3864.4
P10809_1080
3397.0
P10809_1107
4758.8
Intermediate monocyte nTPM: 4528.8
Samples: 6
Max nTPM: 6376.7
Min nTPM: 3051.3
P10809_1004
4055.1
P10809_1023
5058.5
P10809_1042
5069.2
P10809_1061
3051.3
P10809_1081
3561.8
P10809_1108
6376.7
Non-classical monocyte nTPM: 3650.3
Samples: 5
Max nTPM: 4935.7
Min nTPM: 3098.0
P10809_1005
3507.1
P10809_1053
3440.3
P10809_1072
3270.2
P10809_1082
3098.0
P10809_1109
4935.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
540.8
Monaco sample
nTPM
Classical monocyte nTPM: 364.6
Samples: 4
Max nTPM: 411.6
Min nTPM: 322.7
RHH5313_R3680
399.0
RHH5221_R3593
322.7
RHH5250_R3622
325.1
RHH5279_R3651
411.6
Intermediate monocyte nTPM: 540.8
Samples: 4
Max nTPM: 625.7
Min nTPM: 412.3
RHH5314_R3681
566.0
RHH5222_R3594
625.7
RHH5251_R3623
559.2
RHH5280_R3652
412.3
Non-classical monocyte nTPM: 401.1
Samples: 4
Max nTPM: 487.6
Min nTPM: 291.7
RHH5315_R3682
487.6
RHH5223_R3595
412.9
RHH5252_R3624
412.0
RHH5281_R3653
291.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.9
Schmiedel sample id
TPM
Classical monocyte TPM: 38.9
Samples: 91
Max TPM: 75.6
Min TPM: 15.9
MONOCYTES_1
75.6
MONOCYTES_2
66.8
MONOCYTES_3
65.2
MONOCYTES_4
65.0
MONOCYTES_5
62.6
MONOCYTES_6
60.3
MONOCYTES_7
59.9
MONOCYTES_8
59.0
MONOCYTES_9
58.6
MONOCYTES_10
58.4
MONOCYTES_11
55.3
MONOCYTES_12
53.9
MONOCYTES_13
53.4
MONOCYTES_14
52.5
MONOCYTES_15
52.5
MONOCYTES_16
52.4
MONOCYTES_17
51.4
MONOCYTES_18
50.1
MONOCYTES_19
49.7
MONOCYTES_20
49.6
MONOCYTES_21
49.5
MONOCYTES_22
48.4
MONOCYTES_23
47.8
MONOCYTES_24
47.7
MONOCYTES_25
47.6
MONOCYTES_26
47.0
MONOCYTES_27
46.7
MONOCYTES_28
45.6
MONOCYTES_29
45.5
MONOCYTES_30
45.4
MONOCYTES_31
44.9
MONOCYTES_32
44.5
MONOCYTES_33
44.5
MONOCYTES_34
42.8
MONOCYTES_35
42.3
MONOCYTES_36
41.4
MONOCYTES_37
40.8
MONOCYTES_38
40.5
MONOCYTES_39
39.9
MONOCYTES_40
39.9
MONOCYTES_41
39.4
MONOCYTES_42
39.3
MONOCYTES_43
38.2
MONOCYTES_44
38.1
MONOCYTES_45
37.8
MONOCYTES_46
37.6
MONOCYTES_47
36.9
MONOCYTES_48
36.6
MONOCYTES_49
36.5
MONOCYTES_50
36.3
MONOCYTES_51
36.1
MONOCYTES_52
35.0
MONOCYTES_53
34.7
MONOCYTES_54
34.4
MONOCYTES_55
34.1
MONOCYTES_56
34.1
MONOCYTES_57
33.5
MONOCYTES_58
32.7
MONOCYTES_59
32.4
MONOCYTES_60
32.3
MONOCYTES_61
30.9
MONOCYTES_62
30.6
MONOCYTES_63
30.1
MONOCYTES_64
29.8
MONOCYTES_65
29.4
MONOCYTES_66
28.6
MONOCYTES_67
28.3
MONOCYTES_68
28.3
MONOCYTES_69
28.3
MONOCYTES_70
27.8
MONOCYTES_71
27.8
MONOCYTES_72
27.1
MONOCYTES_73
26.7
MONOCYTES_74
26.4
MONOCYTES_75
26.2
MONOCYTES_76
26.2
MONOCYTES_77
25.5
MONOCYTES_78
25.5
MONOCYTES_79
25.4
MONOCYTES_80
24.5
MONOCYTES_81
24.5
MONOCYTES_82
23.7
MONOCYTES_83
22.5
MONOCYTES_84
22.4
MONOCYTES_85
20.9
MONOCYTES_86
18.9
MONOCYTES_87
18.9
MONOCYTES_88
18.8
MONOCYTES_89
18.4
MONOCYTES_90
18.2
MONOCYTES_91
15.9
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Non-classical monocyte TPM: 33.2
Samples: 90
Max TPM: 73.5
Min TPM: 9.9
M2_1
73.5
M2_2
54.7
M2_3
54.7
M2_4
53.5
M2_5
53.1
M2_6
52.8
M2_7
52.7
M2_8
51.7
M2_9
50.5
M2_10
50.1
M2_11
47.5
M2_12
47.2
M2_13
46.8
M2_14
45.4
M2_15
43.3
M2_16
43.0
M2_17
43.0
M2_18
42.6
M2_19
42.5
M2_20
42.2
M2_21
41.9
M2_22
41.5
M2_23
40.6
M2_24
40.3
M2_25
40.1
M2_26
39.9
M2_27
38.8
M2_28
38.4
M2_29
37.9
M2_30
37.8
M2_31
37.8
M2_32
37.4
M2_33
36.8
M2_34
36.6
M2_35
36.4
M2_36
35.6
M2_37
35.5
M2_38
35.1
M2_39
35.1
M2_40
34.9
M2_41
34.7
M2_42
34.5
M2_43
34.4
M2_44
34.1
M2_45
33.8
M2_46
33.7
M2_47
32.7
M2_48
32.5
M2_49
32.2
M2_50
32.0
M2_51
31.5
M2_52
31.4
M2_53
31.3
M2_54
31.2
M2_55
30.5
M2_56
30.3
M2_57
30.3
M2_58
28.8
M2_59
28.0
M2_60
28.0
M2_61
27.8
M2_62
26.8
M2_63
26.3
M2_64
25.8
M2_65
25.3
M2_66
25.0
M2_67
24.6
M2_68
23.8
M2_69
23.0
M2_70
23.0
M2_71
22.6
M2_72
22.3
M2_73
22.2
M2_74
21.2
M2_75
19.9
M2_76
18.9
M2_77
18.8
M2_78
18.2
M2_79
17.4
M2_80
17.4
M2_81
17.2
M2_82
16.9
M2_83
16.8
M2_84
16.6
M2_85
15.4
M2_86
15.1
M2_87
14.6
M2_88
14.2
M2_89
13.4
M2_90
9.9
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