A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5426.4
nTPM
Monaco:
265.7
nTPM
Schmiedel:
44.1
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5426.4
HPA sample
nTPM
NK-cell nTPM: 5426.4
Samples: 6
Max nTPM: 7309.5
Min nTPM: 3162.3
P10809_1013
3162.3
P10809_1033
7309.5
P10809_1052
5009.6
P10809_1071
6934.3
P10809_1093
3581.4
P10809_1103
6561.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
265.7
Monaco sample
nTPM
NK-cell nTPM: 265.7
Samples: 4
Max nTPM: 294.6
Min nTPM: 234.8
RHH5316_R3683
287.0
RHH5224_R3596
234.8
RHH5253_R3625
246.4
RHH5282_R3654
294.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
44.1
Schmiedel sample id
TPM
NK-cell TPM: 44.1
Samples: 90
Max TPM: 90.9
Min TPM: 16.5
NK_1
90.9
NK_2
76.8
NK_3
75.6
NK_4
69.2
NK_5
68.2
NK_6
66.8
NK_7
66.8
NK_8
65.8
NK_9
64.8
NK_10
61.8
NK_11
61.7
NK_12
60.6
NK_13
59.9
NK_14
59.3
NK_15
58.8
NK_16
56.5
NK_17
55.6
NK_18
55.4
NK_19
55.3
NK_20
54.7
NK_21
53.8
NK_22
52.9
NK_23
51.9
NK_24
51.7
NK_25
51.5
NK_26
51.3
NK_27
51.1
NK_28
50.9
NK_29
50.8
NK_30
50.7
NK_31
50.6
NK_32
50.5
NK_33
50.5
NK_34
49.8
NK_35
48.3
NK_36
48.1
NK_37
47.7
NK_38
47.6
NK_39
47.1
NK_40
46.9
NK_41
46.7
NK_42
46.4
NK_43
46.3
NK_44
46.0
NK_45
44.1
NK_46
43.7
NK_47
43.2
NK_48
43.1
NK_49
43.0
NK_50
42.9
NK_51
41.3
NK_52
40.5
NK_53
40.5
NK_54
39.2
NK_55
39.1
NK_56
38.5
NK_57
37.9
NK_58
37.2
NK_59
36.8
NK_60
36.7
NK_61
36.2
NK_62
35.6
NK_63
35.6
NK_64
35.5
NK_65
33.5
NK_66
33.5
NK_67
33.2
NK_68
32.9
NK_69
32.1
NK_70
32.0
NK_71
31.4
NK_72
31.4
NK_73
30.6
NK_74
30.5
NK_75
29.4
NK_76
28.5
NK_77
28.3
NK_78
26.5
NK_79
26.1
NK_80
25.4
NK_81
24.6
NK_82
24.5
NK_83
24.3
NK_84
24.3
NK_85
22.0
NK_86
21.4
NK_87
21.1
NK_88
20.1
NK_89
20.0
NK_90
16.5
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