MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:156.6 nTPM
HPA Brain:186.2 nTPM
GTEx:156.6 nTPM
FANTOM5:143.4 Scaled Tags Per Million
Pig:227.5 nTPM
Mouse:128.3 nTPM
Allen mouse:15.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 186.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 164.4
2586 Male, age 75, left hemisphere 209.6
2019 Male, age 18, unknown 187.5
1870 Female, age 42, unknown 179.4
2411 Female, age 72, unknown 172.0
2828 Female, age 72, unknown 169.3
1833 Male, age 53, unknown 160.4
1827 Male, age 72, unknown 154.6
1830 Male, age 51, unknown 150.7
2666 Male, age 74, left hemisphere 136.0
2219 Male, age 76, both hemispheres 124.5
Dorsal raphe nucleus
nTPM: 142.6
2750 Male, age 76, both hemispheres 165.1
1828 Male, age 53, unknown 154.9
2016 Female, age 72, unknown 139.8
2298 Female, age 72, unknown 135.4
2047 Male, age 72, unknown 117.9
Inferior colliculus
nTPM: 147.0
1890 Male, age 53, unknown 152.7
2097 Female, age 72, unknown 152.7
1848 Female, age 42, unknown 142.0
2849 Male, age 72, unknown 140.6
Median raphe nucleus
nTPM: 118.1
2220 Male, age 76, midline 118.1
Periaquaductal grey, anterior
nTPM: 145.5
2502 Female, age 75, unknown 163.5
1947 Male, age 18, unknown 137.2
1795 Male, age 51, unknown 135.7
Periaquaductal grey, dorsal
nTPM: 127.4
2464 Female, age 72, unknown 138.4
1840 Male, age 53, unknown 126.3
2850 Male, age 76, both hemispheres 126.3
1831 Male, age 72, unknown 118.9
Periaquaductal grey, lateral
nTPM: 120.5
2053 Male, age 18, unknown 125.9
2140 Male, age 76, both hemispheres 121.6
2272 Male, age 74, both hemispheres 114.0
Pretectal area
nTPM: 158.6
2007 Male, age 72, unknown 194.8
1817 Female, age 42, unknown 190.6
1815 Male, age 53, unknown 189.6
1816 Male, age 51, unknown 177.2
1944 Female, age 72, unknown 176.9
2667 Female, age 75, unknown 160.3
2316 Male, age 76, right hemisphere 141.7
2407 Male, age 75, both hemispheres 138.2
2825 Male, age 18, unknown 130.4
2273 Male, age 74, both hemispheres 123.4
2224 Female, age 72, unknown 121.7
Red nucleus
nTPM: 186.2
2503 Female, age 72, unknown 204.7
2769 Male, age 72, unknown 203.0
1904 Male, age 53, unknown 201.7
2785 Male, age 18, unknown 198.8
2227 Male, age 72, unknown 198.5
1865 Male, age 51, unknown 197.2
1821 Female, age 72, unknown 191.1
2588 Male, age 74, left hemisphere 184.8
1954 Female, age 42, unknown 180.2
2823 Male, age 76, right hemisphere 177.7
2725 Female, age 75, unknown 155.4
2584 Male, age 75, left hemisphere 141.0
Substantia nigra
nTPM: 134.1
1889 Female, age 72, unknown 184.8
2583 Male, age 75, right hemisphere 151.0
1851 Male, age 51, unknown 141.1
2665 Male, age 74, both hemispheres 132.5
2590 Female, age 75, unknown 131.8
2699 Male, age 18, unknown 131.4
2409 Female, age 72, unknown 130.5
1916 Female, age 42, unknown 125.0
1941 Male, age 53, unknown 107.3
2241 Male, age 72, unknown 105.2
Superior colliculus
nTPM: 161.3
1995 Male, age 72, unknown 194.5
1913 Female, age 42, unknown 190.3
2668 Female, age 75, unknown 165.9
2087 Female, age 72, unknown 164.5
2664 Male, age 75, both hemispheres 158.5
2261 Male, age 18, unknown 158.1
1895 Male, age 76, right hemisphere 155.7
1796 Male, age 53, unknown 145.1
1839 Male, age 51, unknown 142.2
2587 Male, age 74, left hemisphere 138.6
Ventral tegmental area
nTPM: 135.3
2410 Female, age 72, unknown 152.8
2223 Female, age 72, unknown 150.8
1942 Male, age 51, unknown 136.1
1915 Female, age 42, unknown 128.7
2021 Male, age 53, unknown 125.1
2218 Male, age 76, both hemispheres 118.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 156.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 156.6
Samples: 183

Max nTPM: 302.6
Min nTPM: 71.4
Std nTPM: 38.8
Median nTPM: 154.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 302.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 282.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 277.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 263.4
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 243.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 238.3
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 234.7
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 228.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 225.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 225.2
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 220.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 143.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 143.4
FF:10158-103A5 76 years, female 143.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 227.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 202.9
Samples: 4

Max nTPM: 259.6
Min nTPM: 151.3
Sample A Female 219.4
Sample B Female 151.3
Sample C Male 181.3
Sample D Male 259.6
Midbrain
nTPM: 227.5
Samples: 4

Max nTPM: 388.9
Min nTPM: 145.2
Sample A Female 388.9
Sample B Female 204.3
Sample C Male 145.2
Sample D Male 171.5
Periaqueductal gray
nTPM: 153.7
Samples: 3

Max nTPM: 170.7
Min nTPM: 138.8
Sample B Female 170.7
Sample C Male 151.7
Sample D Male 138.8
Superior colliculi
nTPM: 188.9
Samples: 4

Max nTPM: 248.9
Min nTPM: 101.1
Sample A Female 248.9
Sample B Female 101.1
Sample C Male 182.9
Sample D Male 222.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 128.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 128.3
Samples: 4

Max nTPM: 144.0
Min nTPM: 120.4
Sample A Male 144.0
Sample B Male 121.1
Sample C Female 120.4
Sample D Female 127.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 15.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.6
69735299 Antisense, RP_050503_02_E05, Mouse strain C57BL/6J (56 days, male) 15.6

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