MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.6 nTPM
HPA Brain:19.3 nTPM
GTEx:18.6 nTPM
FANTOM5:14.3 Scaled Tags Per Million
Pig:53.1 nTPM
Mouse:7.7 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 19.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.8
2586 Male, age 75, left hemisphere 28.1
2666 Male, age 74, left hemisphere 21.0
2828 Female, age 72, unknown 20.8
1870 Female, age 42, unknown 18.7
1827 Male, age 72, unknown 17.7
1830 Male, age 51, unknown 17.3
2411 Female, age 72, unknown 17.2
2019 Male, age 18, unknown 16.4
1833 Male, age 53, unknown 16.1
2219 Male, age 76, both hemispheres 14.9
Dorsal raphe nucleus
nTPM: 18.0
2047 Male, age 72, unknown 18.5
1828 Male, age 53, unknown 18.4
2750 Male, age 76, both hemispheres 18.1
2016 Female, age 72, unknown 17.7
2298 Female, age 72, unknown 17.1
Inferior colliculus
nTPM: 17.1
2849 Male, age 72, unknown 22.4
1848 Female, age 42, unknown 17.3
1890 Male, age 53, unknown 15.2
2097 Female, age 72, unknown 13.5
Median raphe nucleus
nTPM: 16.4
2220 Male, age 76, midline 16.4
Periaquaductal grey, anterior
nTPM: 17.3
1795 Male, age 51, unknown 18.7
2502 Female, age 75, unknown 18.7
1947 Male, age 18, unknown 14.5
Periaquaductal grey, dorsal
nTPM: 18.9
2850 Male, age 76, both hemispheres 22.0
1840 Male, age 53, unknown 20.1
1831 Male, age 72, unknown 17.3
2464 Female, age 72, unknown 16.1
Periaquaductal grey, lateral
nTPM: 19.3
2053 Male, age 18, unknown 21.6
2140 Male, age 76, both hemispheres 20.2
2272 Male, age 74, both hemispheres 16.1
Pretectal area
nTPM: 17.9
2825 Male, age 18, unknown 21.2
1817 Female, age 42, unknown 19.6
1815 Male, age 53, unknown 19.1
2667 Female, age 75, unknown 19.0
2407 Male, age 75, both hemispheres 18.8
2007 Male, age 72, unknown 18.2
1816 Male, age 51, unknown 17.5
1944 Female, age 72, unknown 16.8
2224 Female, age 72, unknown 16.5
2273 Male, age 74, both hemispheres 16.1
2316 Male, age 76, right hemisphere 14.2
Red nucleus
nTPM: 17.8
2769 Male, age 72, unknown 20.3
2584 Male, age 75, left hemisphere 19.7
2503 Female, age 72, unknown 19.3
1904 Male, age 53, unknown 18.5
1865 Male, age 51, unknown 18.3
2823 Male, age 76, right hemisphere 18.3
2227 Male, age 72, unknown 17.8
1954 Female, age 42, unknown 17.6
2725 Female, age 75, unknown 16.5
1821 Female, age 72, unknown 16.3
2588 Male, age 74, left hemisphere 16.3
2785 Male, age 18, unknown 15.0
Substantia nigra
nTPM: 16.8
2665 Male, age 74, both hemispheres 23.1
2583 Male, age 75, right hemisphere 20.7
2699 Male, age 18, unknown 20.7
1916 Female, age 42, unknown 18.2
1851 Male, age 51, unknown 16.8
2590 Female, age 75, unknown 16.5
1889 Female, age 72, unknown 15.2
1941 Male, age 53, unknown 14.3
2409 Female, age 72, unknown 11.9
2241 Male, age 72, unknown 10.5
Superior colliculus
nTPM: 18.6
2664 Male, age 75, both hemispheres 24.2
1995 Male, age 72, unknown 20.1
1796 Male, age 53, unknown 19.9
1839 Male, age 51, unknown 19.0
2587 Male, age 74, left hemisphere 18.3
1913 Female, age 42, unknown 18.1
2261 Male, age 18, unknown 17.1
2668 Female, age 75, unknown 17.1
2087 Female, age 72, unknown 16.7
1895 Male, age 76, right hemisphere 15.4
Ventral tegmental area
nTPM: 16.3
2021 Male, age 53, unknown 17.9
1915 Female, age 42, unknown 17.8
2218 Male, age 76, both hemispheres 16.5
2223 Female, age 72, unknown 16.0
1942 Male, age 51, unknown 15.0
2410 Female, age 72, unknown 14.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 18.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.6
Samples: 139

Max nTPM: 43.2
Min nTPM: 8.1
Std nTPM: 5.5
Median nTPM: 17.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 43.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 38.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 33.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 30.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 27.9
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 27.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 27.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 27.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 26.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 26.7
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 26.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 14.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.3
FF:10158-103A5 76 years, female 14.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 53.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 49.9
Samples: 4

Max nTPM: 59.0
Min nTPM: 38.8
Sample A Female 56.4
Sample B Female 38.8
Sample C Male 59.0
Sample D Male 45.4
Midbrain
nTPM: 53.1
Samples: 4

Max nTPM: 74.2
Min nTPM: 43.3
Sample A Female 74.2
Sample B Female 43.5
Sample C Male 51.4
Sample D Male 43.3
Periaqueductal gray
nTPM: 43.5
Samples: 3

Max nTPM: 52.5
Min nTPM: 37.2
Sample B Female 37.2
Sample C Male 52.5
Sample D Male 40.7
Superior colliculi
nTPM: 46.2
Samples: 4

Max nTPM: 54.8
Min nTPM: 32.4
Sample A Female 54.8
Sample B Female 32.4
Sample C Male 44.7
Sample D Male 52.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 7.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.8
Samples: 4

Max nTPM: 8.5
Min nTPM: 6.3
Sample A Male 8.3
Sample B Male 6.3
Sample C Female 7.9
Sample D Female 8.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
75198070 Antisense, RP_060502_01_F06, Mouse strain C57BL/6J (56 days, male) 0.4

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