On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
67.7
nTPM
HPA Brain:
160.6
nTPM
GTEx:
67.7
nTPM
FANTOM5:
86.3
Scaled Tags Per Million
Macaque:
53.1
nTPM
Mouse:
56.6
nTPM
Rat:
49.9
nTPM
Pig:
23.8
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
160.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 146.5
2586
Male, age 75, left hemisphere
217.2
2666
Male, age 74, left hemisphere
158.5
1830
Male, age 51, unknown
148.3
2828
Female, age 72, unknown
143.8
1833
Male, age 53, unknown
142.1
1827
Male, age 72, unknown
137.1
2411
Female, age 72, unknown
134.6
1870
Female, age 42, unknown
131.4
2019
Male, age 18, unknown
130.7
2219
Male, age 76, both hemispheres
121.0
Dorsal raphe nucleus nTPM: 138.1
2016
Female, age 72, unknown
144.9
2750
Male, age 76, both hemispheres
144.7
1828
Male, age 53, unknown
143.5
2047
Male, age 72, unknown
140.5
2298
Female, age 72, unknown
117.1
Inferior colliculus nTPM: 113.6
2849
Male, age 72, unknown
131.7
1890
Male, age 53, unknown
114.1
1848
Female, age 42, unknown
107.5
2097
Female, age 72, unknown
100.9
Median raphe nucleus nTPM: 124.1
2220
Male, age 76, midline
124.1
Periaquaductal grey, anterior nTPM: 140.0
2502
Female, age 75, unknown
152.1
1947
Male, age 18, unknown
139.3
1795
Male, age 51, unknown
128.8
Periaquaductal grey, dorsal nTPM: 120.3
2850
Male, age 76, both hemispheres
127.5
1831
Male, age 72, unknown
122.5
1840
Male, age 53, unknown
117.5
2464
Female, age 72, unknown
113.6
Periaquaductal grey, lateral nTPM: 121.5
2053
Male, age 18, unknown
128.9
2140
Male, age 76, both hemispheres
119.9
2272
Male, age 74, both hemispheres
115.7
Pretectal area nTPM: 116.8
2407
Male, age 75, both hemispheres
157.7
2825
Male, age 18, unknown
134.0
1815
Male, age 53, unknown
120.2
2007
Male, age 72, unknown
119.0
2316
Male, age 76, right hemisphere
115.5
2273
Male, age 74, both hemispheres
114.5
1817
Female, age 42, unknown
112.0
1816
Male, age 51, unknown
107.5
2667
Female, age 75, unknown
104.6
2224
Female, age 72, unknown
101.0
1944
Female, age 72, unknown
98.9
Red nucleus nTPM: 160.6
2584
Male, age 75, left hemisphere
206.0
1904
Male, age 53, unknown
166.0
2769
Male, age 72, unknown
166.0
2588
Male, age 74, left hemisphere
165.8
2725
Female, age 75, unknown
160.8
1865
Male, age 51, unknown
159.9
2227
Male, age 72, unknown
159.7
1821
Female, age 72, unknown
154.9
2823
Male, age 76, right hemisphere
154.5
2503
Female, age 72, unknown
150.0
1954
Female, age 42, unknown
143.9
2785
Male, age 18, unknown
140.0
Substantia nigra nTPM: 146.3
2583
Male, age 75, right hemisphere
175.5
2699
Male, age 18, unknown
164.4
1916
Female, age 42, unknown
162.2
2665
Male, age 74, both hemispheres
158.8
1851
Male, age 51, unknown
155.0
2590
Female, age 75, unknown
148.9
1941
Male, age 53, unknown
146.8
2409
Female, age 72, unknown
124.3
1889
Female, age 72, unknown
118.7
2241
Male, age 72, unknown
108.4
Superior colliculus nTPM: 132.3
2664
Male, age 75, both hemispheres
184.1
1995
Male, age 72, unknown
142.6
1913
Female, age 42, unknown
137.5
1839
Male, age 51, unknown
136.4
2587
Male, age 74, left hemisphere
130.7
2668
Female, age 75, unknown
128.6
1796
Male, age 53, unknown
124.4
1895
Male, age 76, right hemisphere
122.1
2261
Male, age 18, unknown
118.9
2087
Female, age 72, unknown
97.9
Ventral tegmental area nTPM: 137.9
2223
Female, age 72, unknown
146.4
2410
Female, age 72, unknown
143.4
1942
Male, age 51, unknown
140.6
1915
Female, age 42, unknown
139.8
2021
Male, age 53, unknown
131.0
2218
Male, age 76, both hemispheres
126.4
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
67.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 67.7
Samples: 183
Max nTPM: 144.2
Min nTPM: 32.0
Std nTPM: 18.2
Median nTPM: 65.4
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
144.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
119.7
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
112.1
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
108.4
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
107.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
106.1
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
104.9
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
104.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
104.0
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
103.0
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
103.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
102.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
100.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
99.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
95.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
95.1
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
94.9
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
94.6
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
93.9
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
93.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
92.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
89.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
87.8
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
87.4
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
85.7
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
85.6
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
84.3
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
82.9
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
82.8
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
82.7
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
81.9
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
81.6
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
81.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
81.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
81.1
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
81.0
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
79.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
79.5
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
78.7
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
78.6
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
78.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
78.4
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
78.3
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
78.1
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
77.9
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
77.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
76.0
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
76.0
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
75.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
74.9
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
74.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
74.8
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
74.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
74.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
74.3
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
74.1
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
74.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
73.7
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
73.4
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
73.2
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
73.2
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
72.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
72.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
72.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
72.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
72.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
71.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
71.4
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
71.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
71.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
71.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
70.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
70.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
70.3
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
69.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
69.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
69.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
69.7
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
69.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
69.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
68.9
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
68.8
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
68.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
68.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
67.8
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
67.3
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
67.2
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
67.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
66.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
66.5
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
66.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
65.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
65.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
65.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
65.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
65.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
65.1
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
64.9
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
64.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
64.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
64.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
64.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
63.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
63.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
63.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
63.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
62.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
62.6
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
61.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
61.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
61.4
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
61.4
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
61.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
60.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
60.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
60.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
60.4
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
60.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
59.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
59.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
59.7
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
59.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
59.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
59.2
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
59.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
59.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
59.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
58.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
58.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
58.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
58.2
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
58.1
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
58.1
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
57.1
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
57.1
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
56.5
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
55.7
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
55.1
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
55.0
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
54.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
54.4
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
54.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
54.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
53.8
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
53.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
53.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
53.1
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
52.7
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
52.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
52.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
52.2
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
51.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
51.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
51.2
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
51.2
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
50.5
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
50.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
50.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
50.0
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
49.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
48.8
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
48.8
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
48.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
47.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
47.3
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
46.7
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
46.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
46.1
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
45.9
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
44.5
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
43.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
42.5
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
42.3
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
40.2
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
38.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
34.3
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
34.2
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
34.1
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
33.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
33.0
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
32.8
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
32.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
32.0
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
53.1
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 47.6
Samples: 1
Max nTPM: 47.6
Min nTPM: 47.6
Sample A
47.6
Midbrain nTPM: 39.4
Samples: 1
Max nTPM: 39.4
Min nTPM: 39.4
Sample A
39.4
Superior colliculi nTPM: 53.1
Samples: 1
Max nTPM: 53.1
Min nTPM: 53.1
Sample A
53.1
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
23.8
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 23.8
Samples: 3
Max nTPM: 27.2
Min nTPM: 17.5
Sample A
Female
27.2
Sample B
Female
17.5
Sample C
Male
26.8
Midbrain nTPM: 22.9
Samples: 3
Max nTPM: 28.8
Min nTPM: 19.7
Sample B
Female
19.7
Sample C
Male
28.8
Sample D
Male
20.2
Periaqueductal gray nTPM: 16.9
Samples: 3
Max nTPM: 17.7
Min nTPM: 15.3
Sample B
Female
17.7
Sample C
Male
17.7
Sample D
Male
15.3
Superior colliculi nTPM: 20.6
Samples: 4
Max nTPM: 27.1
Min nTPM: 11.1
Sample A
Female
20.8
Sample B
Female
11.1
Sample C
Male
27.1
Sample D
Male
23.3
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
56.6
Mouse sample
Sample description
nTPM
Midbrain nTPM: 56.6
Samples: 4
Max nTPM: 62.1
Min nTPM: 50.9
Sample A
50.9
Sample B
62.1
Sample C
58.2
Sample D
55.3
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
49.9
Rat sample
Sample description
nTPM
Midbrain nTPM: 49.9
Samples: 4
Max nTPM: 52.3
Min nTPM: 47.9
Sample A
51.2
Sample A
52.3
Sample A
48.3
Sample A
47.9
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
