On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
78.2
nTPM
HPA Brain:
155.6
nTPM
GTEx:
78.2
nTPM
FANTOM5:
86.6
Scaled Tags Per Million
Macaque:
76.2
nTPM
Mouse:
52.8
nTPM
Rat:
59.1
nTPM
Pig:
33.1
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
11693
Sample
Intensity
Spinal cord_01
10154
Spinal cord_02
7711
Spinal cord_03
23576
Spinal cord_04
14700
Spinal cord_05
17765
Spinal cord_06
12841
Spinal cord_07
10545
Spinal cord_08
8073
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
155.6
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 142.4
2818
Female, age 79, both hemispheres
153.9
2734
Male, age 80, both hemispheres
153.3
2819
Male, age 47, both hemispheres
134.4
2193
Male, age 75, both hemispheres
128.2
Cervical spinal cord, central gray nTPM: 145.4
2565
Male, age 75, midline
180.2
2816
Male, age 47, midline
152.2
2194
Female, age 79, both hemispheres
140.1
2048
Male, age 55, midline
133.1
1981
Female, age 72, midline
121.2
Cervical spinal cord, dorsal horn nTPM: 116.9
2296
Male, age 66, both hemispheres
148.7
2173
Female, age 72, unknown
124.0
2721
Male, age 90, both hemispheres
114.9
1877
Male, age 55, unknown
111.7
2069
Male, age 47, both hemispheres
107.5
2297
Male, age 75, both hemispheres
94.8
Cervical spinal cord, ventral horn nTPM: 145.4
2480
Male, age 75, both hemispheres
164.7
2809
Male, age 90, both hemispheres
158.3
2820
Female, age 79, both hemispheres
155.1
2295
Male, age 66, both hemispheres
135.9
2098
Female, age 72, unknown
129.6
2068
Male, age 55, unknown
128.6
Dorsal funiculus (white matter) nTPM: 155.6
2064
Female, age 79, both hemispheres
176.1
2817
Male, age 47, both hemispheres
166.9
2810
Male, age 90, both hemispheres
147.6
2812
Male, age 66, both hemispheres
146.2
2128
Male, age 75, both hemispheres
141.2
Lateral funiculus (white matter) nTPM: 130.4
2094
Female, age 79, both hemispheres
148.7
2192
Male, age 75, both hemispheres
133.1
2099
Male, age 90, both hemispheres
125.5
2294
Male, age 66, both hemispheres
114.1
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
78.2
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 78.2
Samples: 204
Max nTPM: 149.7
Min nTPM: 40.0
Std nTPM: 18.5
Median nTPM: 78.3
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
149.7
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
133.0
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
123.3
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
123.2
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
119.0
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
118.2
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
117.1
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
116.2
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
111.8
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
110.4
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
110.0
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
109.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
108.9
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
107.9
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
106.7
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
105.7
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
105.1
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
102.9
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
101.5
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
101.3
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
100.8
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
100.6
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
100.6
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
100.2
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
100.1
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
99.9
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
98.6
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
98.5
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
97.6
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
97.6
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
97.6
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
96.5
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
96.4
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
94.6
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
93.9
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
93.9
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
93.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
92.7
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
92.3
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
92.1
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
91.5
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
90.8
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
90.3
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
89.9
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
89.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
89.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
89.4
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
89.3
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
88.9
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
88.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
88.3
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
88.0
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
87.9
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
87.8
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
87.5
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
87.5
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
87.2
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
86.7
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
86.4
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
86.2
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
85.7
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
85.7
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
85.4
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
84.9
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
84.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
84.9
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
84.5
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
84.4
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
84.2
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
83.8
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
83.6
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
83.2
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
83.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
83.1
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
82.9
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
82.8
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
82.7
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
82.7
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
82.7
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
82.5
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
82.4
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
81.6
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
81.4
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
80.9
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
80.7
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
80.3
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
80.1
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
80.1
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
79.7
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
79.7
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
79.5
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
79.5
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
79.3
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
79.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
79.1
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
79.1
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
79.0
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
78.9
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
78.9
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
78.8
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
78.4
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
78.4
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
78.3
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
77.7
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
77.6
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
77.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
77.0
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
76.9
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
76.9
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
76.7
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
76.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
76.2
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
76.2
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
75.9
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
75.9
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
75.7
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
75.3
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
74.9
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
74.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
74.7
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
74.5
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
74.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
74.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
74.3
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
74.0
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
73.9
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
73.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
73.7
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
73.5
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
73.5
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
73.2
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
72.0
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
71.8
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
71.7
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
71.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
71.4
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
71.3
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
70.9
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
70.8
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
70.7
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
70.4
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
70.0
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
69.9
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
69.7
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
69.6
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
69.4
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
69.4
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
69.0
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
68.2
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
68.0
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
67.9
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
67.8
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
66.6
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
66.4
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
66.4
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
65.3
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
64.8
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
64.7
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
63.6
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
63.3
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
62.5
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
62.2
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
61.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
61.1
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
60.8
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
60.4
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
60.2
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
59.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
59.6
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
59.5
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
59.0
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
58.9
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
58.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
58.5
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
58.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
57.2
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
57.0
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
56.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
56.4
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
55.8
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
55.8
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
55.6
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
53.9
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
53.9
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
52.9
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
52.4
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
51.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
51.6
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
51.2
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
50.9
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
49.9
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
49.8
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
49.0
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
49.0
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
48.1
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
47.5
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
47.1
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
45.9
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
45.1
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
43.1
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
41.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
41.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
40.8
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
40.0
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
76.2
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 43.8
Samples: 2
Max nTPM: 73.2
Min nTPM: 14.4
Sample A
14.4
Sample B
73.2
Ventral spinal cord nTPM: 76.2
Samples: 1
Max nTPM: 76.2
Min nTPM: 76.2
Sample A
76.2
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
33.1
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 26.3
Samples: 4
Max nTPM: 28.9
Min nTPM: 22.7
Sample A
Female
28.9
Sample B
Female
24.6
Sample C
Male
22.7
Sample D
Male
28.8
Ventral spinal cord nTPM: 33.1
Samples: 4
Max nTPM: 37.2
Min nTPM: 31.2
Sample A
Female
37.2
Sample B
Female
31.2
Sample C
Male
32.1
Sample D
Male
32.0
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
52.8
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 52.8
Samples: 4
Max nTPM: 59.8
Min nTPM: 47.8
Sample A
47.8
Sample B
59.8
Sample C
52.0
Sample D
51.6
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
59.1
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 59.1
Samples: 4
Max nTPM: 63.4
Min nTPM: 52.8
Sample A
63.4
Sample A
62.6
Sample A
57.5
Sample A
52.8
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The Human Protein Atlas project is funded
