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  • ABCA2
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:178.1 nTPM
HPA Brain:426.1 nTPM
GTEx:178.1 nTPM
FANTOM5:345.8 Scaled Tags Per Million
Pig:267.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

426.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 367.4
2816 Male, age 47, midline 434.2
2194 Female, age 79, both hemispheres 409.8
1981 Female, age 72, midline 394.6
2565 Male, age 75, midline 311.4
2048 Male, age 55, midline 287.3
Cervical spinal cord, dorsal horn
nTPM: 420.4
2296 Male, age 66, both hemispheres 795.9
2173 Female, age 72, unknown 515.7
2069 Male, age 47, both hemispheres 380.2
1877 Male, age 55, unknown 348.1
2297 Male, age 75, both hemispheres 245.8
2721 Male, age 90, both hemispheres 236.8
Cervical spinal cord, ventral horn
nTPM: 426.1
2068 Male, age 55, unknown 531.5
2820 Female, age 79, both hemispheres 482.4
2098 Female, age 72, unknown 439.6
2480 Male, age 75, both hemispheres 384.4
2809 Male, age 90, both hemispheres 367.5
2295 Male, age 66, both hemispheres 351.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

178.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 178.1
Samples: 204

Max nTPM: 546.9
Min nTPM: 17.6
Std nTPM: 78.0
Median nTPM: 171.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 546.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 456.4
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 385.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 376.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 355.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 355.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 354.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 348.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 345.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 339.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 318.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 309.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 296.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 295.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 294.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 290.4
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 283.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 276.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 272.6
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 269.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 269.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 267.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 266.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 263.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 261.7
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 261.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 259.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 253.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 248.2
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 247.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 247.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 246.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 246.3
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 242.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 241.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 240.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 238.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 238.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 235.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 233.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 232.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 232.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 232.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 231.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 230.8
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 230.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 229.4
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 228.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 226.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 221.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 219.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 219.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 218.1
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 217.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 215.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 214.5
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 214.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 212.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 211.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 211.0
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 210.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 209.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 204.8
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 204.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 203.3
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 201.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 201.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 200.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 198.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 198.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 197.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 196.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 195.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 194.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 194.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 193.5
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 192.1
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 192.0
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 191.9
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 191.4
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 191.1
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 190.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 188.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 186.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 185.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 184.8
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 184.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 182.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 182.4
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 182.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 182.2
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 181.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 180.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 179.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 179.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 176.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 175.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 175.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 175.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 173.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 172.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 171.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 170.4
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 169.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 169.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 168.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 167.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 166.2
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 166.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 165.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 164.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 161.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 161.7
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 161.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 160.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 160.6
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 160.5
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 160.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 160.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 159.1
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 156.8
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 154.2
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 153.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 153.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 153.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 152.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 151.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 150.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 148.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 147.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 143.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 141.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 140.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 140.7
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 140.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 140.3
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 138.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 137.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 136.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 135.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 134.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 134.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 134.3
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 133.2
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 132.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 132.4
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 131.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 131.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 129.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 129.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 128.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 128.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 126.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 125.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 124.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 123.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 123.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 123.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 119.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 117.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 117.3
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 115.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 112.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 112.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 111.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 110.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 106.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 105.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 104.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 104.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 103.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 102.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 101.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 101.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 100.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 97.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 96.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 91.8
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 90.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 90.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 90.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 89.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 88.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 84.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 83.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 83.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 79.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 77.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 77.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 77.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 72.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 70.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 68.6
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 67.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 67.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 63.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 61.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 60.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 54.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 53.9
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 51.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 51.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 47.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 17.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

345.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 345.8
FF:10181-103D1 60 years, female 426.4
FF:10159-103A6 76 years, female 265.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

267.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 227.4
Samples: 4

Max nTPM: 288.4
Min nTPM: 175.6
Sample A Female 288.4
Sample B Female 209.7
Sample C Male 175.6
Sample D Male 235.7
Ventral spinal cord
nTPM: 267.8
Samples: 4

Max nTPM: 329.8
Min nTPM: 227.5
Sample A Female 329.8
Sample B Female 227.5
Sample C Male 248.8
Sample D Male 265.0

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