A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1960.1
nTPM
Monaco:
226.5
nTPM
Schmiedel:
237.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1960.1
HPA sample
nTPM
Memory B-cell nTPM: 1960.1
Samples: 6
Max nTPM: 2884.1
Min nTPM: 1614.7
P10809_1017
1622.4
P10809_1025
1771.9
P10809_1044
2884.1
P10809_1063
1614.7
P10809_1092
1833.7
P10809_1105
2034.0
Naive B-cell nTPM: 1938.3
Samples: 6
Max nTPM: 2752.9
Min nTPM: 1604.4
P10809_1011
1753.7
P10809_1029
1701.4
P10809_1048
2752.9
P10809_1067
1604.4
P10809_1091
1846.1
P10809_1104
1971.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
226.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 226.5
Samples: 4
Max nTPM: 334.5
Min nTPM: 48.2
RHH5310_R3677
254.0
RHH5218_R3590
48.2
RHH5247_R3619
269.2
RHH5276_R3648
334.5
Naive B-cell nTPM: 220.2
Samples: 4
Max nTPM: 398.1
Min nTPM: 53.0
RHH5308_R3675
271.0
RHH5216_R3588
53.0
RHH5245_R3617
398.1
RHH5274_R3646
158.7
Non-switched memory B-cell nTPM: 146.4
Samples: 4
Max nTPM: 239.9
Min nTPM: 38.1
RHH5309_R3676
238.6
RHH5217_R3589
69.1
RHH5246_R3618
38.1
RHH5275_R3647
239.9
Plasmablast nTPM: 186.9
Samples: 4
Max nTPM: 264.9
Min nTPM: 113.0
RHH5312_R3679
236.5
RHH5220_R3592
113.0
RHH5249_R3621
133.0
RHH5278_R3650
264.9
Switched memory B-cell nTPM: 154.8
Samples: 4
Max nTPM: 208.9
Min nTPM: 104.9
RHH5311_R3678
187.8
RHH5219_R3591
117.6
RHH5248_R3620
104.9
RHH5277_R3649
208.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
237.1
Schmiedel sample id
TPM
Naive B-cell TPM: 237.1
Samples: 91
Max TPM: 499.6
Min TPM: 49.8
B_CELL_NAIVE_1
499.6
B_CELL_NAIVE_2
413.8
B_CELL_NAIVE_3
405.4
B_CELL_NAIVE_4
391.5
B_CELL_NAIVE_5
365.0
B_CELL_NAIVE_6
360.0
B_CELL_NAIVE_7
357.5
B_CELL_NAIVE_8
355.6
B_CELL_NAIVE_9
354.8
B_CELL_NAIVE_10
353.4
B_CELL_NAIVE_11
352.6
B_CELL_NAIVE_12
348.1
B_CELL_NAIVE_13
344.1
B_CELL_NAIVE_14
339.2
B_CELL_NAIVE_15
338.8
B_CELL_NAIVE_16
337.1
B_CELL_NAIVE_17
332.7
B_CELL_NAIVE_18
325.3
B_CELL_NAIVE_19
322.8
B_CELL_NAIVE_20
322.6
B_CELL_NAIVE_21
316.4
B_CELL_NAIVE_22
315.7
B_CELL_NAIVE_23
310.8
B_CELL_NAIVE_24
310.3
B_CELL_NAIVE_25
305.5
B_CELL_NAIVE_26
301.4
B_CELL_NAIVE_27
297.1
B_CELL_NAIVE_28
293.6
B_CELL_NAIVE_29
282.4
B_CELL_NAIVE_30
282.1
B_CELL_NAIVE_31
281.6
B_CELL_NAIVE_32
279.8
B_CELL_NAIVE_33
275.0
B_CELL_NAIVE_34
274.9
B_CELL_NAIVE_35
269.7
B_CELL_NAIVE_36
265.4
B_CELL_NAIVE_37
265.3
B_CELL_NAIVE_38
262.1
B_CELL_NAIVE_39
260.6
B_CELL_NAIVE_40
256.0
B_CELL_NAIVE_41
251.2
B_CELL_NAIVE_42
250.1
B_CELL_NAIVE_43
249.9
B_CELL_NAIVE_44
249.8
B_CELL_NAIVE_45
249.7
B_CELL_NAIVE_46
244.6
B_CELL_NAIVE_47
243.4
B_CELL_NAIVE_48
234.9
B_CELL_NAIVE_49
230.5
B_CELL_NAIVE_50
229.3
B_CELL_NAIVE_51
227.6
B_CELL_NAIVE_52
227.0
B_CELL_NAIVE_53
221.2
B_CELL_NAIVE_54
217.1
B_CELL_NAIVE_55
216.2
B_CELL_NAIVE_56
215.0
B_CELL_NAIVE_57
211.6
B_CELL_NAIVE_58
209.2
B_CELL_NAIVE_59
204.6
B_CELL_NAIVE_60
203.1
B_CELL_NAIVE_61
195.2
B_CELL_NAIVE_62
192.5
B_CELL_NAIVE_63
191.5
B_CELL_NAIVE_64
191.5
B_CELL_NAIVE_65
188.6
B_CELL_NAIVE_66
180.8
B_CELL_NAIVE_67
180.2
B_CELL_NAIVE_68
174.8
B_CELL_NAIVE_69
174.7
B_CELL_NAIVE_70
174.2
B_CELL_NAIVE_71
168.0
B_CELL_NAIVE_72
164.5
B_CELL_NAIVE_73
148.8
B_CELL_NAIVE_74
147.5
B_CELL_NAIVE_75
142.8
B_CELL_NAIVE_76
137.4
B_CELL_NAIVE_77
134.0
B_CELL_NAIVE_78
133.2
B_CELL_NAIVE_79
127.7
B_CELL_NAIVE_80
115.3
B_CELL_NAIVE_81
99.0
B_CELL_NAIVE_82
95.6
B_CELL_NAIVE_83
88.5
B_CELL_NAIVE_84
87.7
B_CELL_NAIVE_85
79.6
B_CELL_NAIVE_86
76.8
B_CELL_NAIVE_87
68.7
B_CELL_NAIVE_88
55.2
B_CELL_NAIVE_89
53.0
B_CELL_NAIVE_90
51.5
B_CELL_NAIVE_91
49.8
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