A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4717.0
nTPM
Monaco:
1314.1
nTPM
Schmiedel:
1373.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4717.0
HPA sample
nTPM
Memory B-cell nTPM: 4717.1
Samples: 6
Max nTPM: 5887.8
Min nTPM: 3827.9
P10809_1017
3827.9
P10809_1025
4932.1
P10809_1044
5887.8
P10809_1063
4337.3
P10809_1092
4754.4
P10809_1105
4562.9
Naive B-cell nTPM: 4369.0
Samples: 6
Max nTPM: 6398.0
Min nTPM: 3205.2
P10809_1011
3205.2
P10809_1029
4334.2
P10809_1048
6398.0
P10809_1067
3815.4
P10809_1091
3984.1
P10809_1104
4476.8
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1314.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 1314.1
Samples: 4
Max nTPM: 2144.2
Min nTPM: 425.9
RHH5310_R3677
1260.0
RHH5218_R3590
425.9
RHH5247_R3619
2144.2
RHH5276_R3648
1426.4
Naive B-cell nTPM: 1275.3
Samples: 4
Max nTPM: 1760.2
Min nTPM: 616.0
RHH5308_R3675
1760.2
RHH5216_R3588
616.0
RHH5245_R3617
1718.1
RHH5274_R3646
1006.9
Non-switched memory B-cell nTPM: 1048.8
Samples: 4
Max nTPM: 1456.0
Min nTPM: 605.1
RHH5309_R3676
1456.0
RHH5217_R3589
605.1
RHH5246_R3618
756.6
RHH5275_R3647
1377.3
Plasmablast nTPM: 936.8
Samples: 4
Max nTPM: 1121.0
Min nTPM: 673.2
RHH5312_R3679
1121.0
RHH5220_R3592
673.2
RHH5249_R3621
995.9
RHH5278_R3650
957.0
Switched memory B-cell nTPM: 1099.6
Samples: 4
Max nTPM: 1645.2
Min nTPM: 647.0
RHH5311_R3678
1645.2
RHH5219_R3591
967.9
RHH5248_R3620
647.0
RHH5277_R3649
1138.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1373.7
Schmiedel sample id
TPM
Naive B-cell TPM: 1373.7
Samples: 91
Max TPM: 2161.7
Min TPM: 561.4
B_CELL_NAIVE_1
2161.7
B_CELL_NAIVE_2
1964.0
B_CELL_NAIVE_3
1929.7
B_CELL_NAIVE_4
1926.9
B_CELL_NAIVE_5
1841.2
B_CELL_NAIVE_6
1812.9
B_CELL_NAIVE_7
1802.9
B_CELL_NAIVE_8
1796.1
B_CELL_NAIVE_9
1754.6
B_CELL_NAIVE_10
1734.4
B_CELL_NAIVE_11
1718.5
B_CELL_NAIVE_12
1716.9
B_CELL_NAIVE_13
1704.7
B_CELL_NAIVE_14
1704.5
B_CELL_NAIVE_15
1703.6
B_CELL_NAIVE_16
1700.0
B_CELL_NAIVE_17
1696.6
B_CELL_NAIVE_18
1689.8
B_CELL_NAIVE_19
1681.2
B_CELL_NAIVE_20
1680.4
B_CELL_NAIVE_21
1674.4
B_CELL_NAIVE_22
1670.4
B_CELL_NAIVE_23
1654.6
B_CELL_NAIVE_24
1635.2
B_CELL_NAIVE_25
1631.2
B_CELL_NAIVE_26
1624.3
B_CELL_NAIVE_27
1608.2
B_CELL_NAIVE_28
1604.8
B_CELL_NAIVE_29
1603.6
B_CELL_NAIVE_30
1600.5
B_CELL_NAIVE_31
1594.9
B_CELL_NAIVE_32
1589.9
B_CELL_NAIVE_33
1589.4
B_CELL_NAIVE_34
1587.5
B_CELL_NAIVE_35
1584.9
B_CELL_NAIVE_36
1584.0
B_CELL_NAIVE_37
1579.8
B_CELL_NAIVE_38
1524.3
B_CELL_NAIVE_39
1506.7
B_CELL_NAIVE_40
1501.4
B_CELL_NAIVE_41
1498.0
B_CELL_NAIVE_42
1486.4
B_CELL_NAIVE_43
1456.4
B_CELL_NAIVE_44
1446.1
B_CELL_NAIVE_45
1438.0
B_CELL_NAIVE_46
1437.8
B_CELL_NAIVE_47
1436.0
B_CELL_NAIVE_48
1414.1
B_CELL_NAIVE_49
1390.8
B_CELL_NAIVE_50
1389.9
B_CELL_NAIVE_51
1383.5
B_CELL_NAIVE_52
1337.1
B_CELL_NAIVE_53
1328.9
B_CELL_NAIVE_54
1318.0
B_CELL_NAIVE_55
1317.6
B_CELL_NAIVE_56
1315.6
B_CELL_NAIVE_57
1312.1
B_CELL_NAIVE_58
1300.1
B_CELL_NAIVE_59
1268.3
B_CELL_NAIVE_60
1265.6
B_CELL_NAIVE_61
1257.5
B_CELL_NAIVE_62
1251.0
B_CELL_NAIVE_63
1251.0
B_CELL_NAIVE_64
1232.7
B_CELL_NAIVE_65
1232.6
B_CELL_NAIVE_66
1209.7
B_CELL_NAIVE_67
1199.5
B_CELL_NAIVE_68
1182.7
B_CELL_NAIVE_69
1090.4
B_CELL_NAIVE_70
1088.4
B_CELL_NAIVE_71
1084.6
B_CELL_NAIVE_72
1084.4
B_CELL_NAIVE_73
1069.3
B_CELL_NAIVE_74
1058.5
B_CELL_NAIVE_75
1057.9
B_CELL_NAIVE_76
1038.8
B_CELL_NAIVE_77
970.6
B_CELL_NAIVE_78
933.4
B_CELL_NAIVE_79
911.3
B_CELL_NAIVE_80
892.5
B_CELL_NAIVE_81
839.3
B_CELL_NAIVE_82
807.3
B_CELL_NAIVE_83
804.3
B_CELL_NAIVE_84
777.4
B_CELL_NAIVE_85
766.2
B_CELL_NAIVE_86
746.5
B_CELL_NAIVE_87
653.1
B_CELL_NAIVE_88
606.5
B_CELL_NAIVE_89
572.7
B_CELL_NAIVE_90
568.8
B_CELL_NAIVE_91
561.4
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