A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2837.8
nTPM
Monaco:
434.4
nTPM
Schmiedel:
936.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2837.8
HPA sample
nTPM
NK-cell nTPM: 2837.7
Samples: 6
Max nTPM: 3360.0
Min nTPM: 2036.8
P10809_1013
2270.4
P10809_1033
3279.1
P10809_1052
2991.7
P10809_1071
3088.4
P10809_1093
2036.8
P10809_1103
3360.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
434.4
Monaco sample
nTPM
NK-cell nTPM: 434.4
Samples: 4
Max nTPM: 541.8
Min nTPM: 344.6
RHH5316_R3683
541.8
RHH5224_R3596
344.6
RHH5253_R3625
384.9
RHH5282_R3654
466.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
936.4
Schmiedel sample id
TPM
NK-cell TPM: 936.4
Samples: 90
Max TPM: 1677.0
Min TPM: 469.3
NK_1
1677.0
NK_2
1385.3
NK_3
1288.5
NK_4
1279.7
NK_5
1279.2
NK_6
1277.5
NK_7
1276.5
NK_8
1243.1
NK_9
1235.5
NK_10
1228.0
NK_11
1225.8
NK_12
1220.5
NK_13
1204.4
NK_14
1200.7
NK_15
1199.6
NK_16
1186.1
NK_17
1175.0
NK_18
1171.1
NK_19
1165.2
NK_20
1138.9
NK_21
1120.8
NK_22
1114.9
NK_23
1103.8
NK_24
1101.4
NK_25
1086.6
NK_26
1085.1
NK_27
1084.6
NK_28
1079.7
NK_29
1072.1
NK_30
1069.6
NK_31
1067.9
NK_32
1026.2
NK_33
1007.4
NK_34
998.5
NK_35
993.3
NK_36
988.0
NK_37
987.9
NK_38
980.4
NK_39
973.4
NK_40
968.0
NK_41
964.7
NK_42
960.2
NK_43
955.1
NK_44
952.1
NK_45
950.9
NK_46
929.5
NK_47
923.8
NK_48
909.6
NK_49
904.5
NK_50
903.7
NK_51
901.9
NK_52
896.5
NK_53
888.8
NK_54
883.8
NK_55
872.2
NK_56
871.1
NK_57
864.4
NK_58
838.4
NK_59
836.3
NK_60
834.0
NK_61
830.4
NK_62
823.3
NK_63
813.7
NK_64
808.9
NK_65
805.6
NK_66
801.6
NK_67
801.0
NK_68
778.6
NK_69
777.1
NK_70
763.8
NK_71
732.8
NK_72
731.4
NK_73
712.9
NK_74
710.1
NK_75
706.1
NK_76
683.9
NK_77
663.0
NK_78
653.5
NK_79
631.6
NK_80
616.7
NK_81
612.8
NK_82
592.9
NK_83
590.4
NK_84
590.2
NK_85
589.4
NK_86
527.7
NK_87
492.2
NK_88
479.3
NK_89
475.7
NK_90
469.3
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