A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2654.6
nTPM
Monaco:
776.3
nTPM
Schmiedel:
1005.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2654.6
HPA sample
nTPM
Classical monocyte nTPM: 2654.6
Samples: 6
Max nTPM: 4930.7
Min nTPM: 1670.2
P10809_1003
4930.7
P10809_1020
2209.9
P10809_1039
2631.4
P10809_1058
1835.8
P10809_1080
1670.2
P10809_1107
2649.6
Intermediate monocyte nTPM: 2150.5
Samples: 6
Max nTPM: 3286.0
Min nTPM: 1549.4
P10809_1004
1647.7
P10809_1023
2546.2
P10809_1042
2227.6
P10809_1061
1646.0
P10809_1081
1549.4
P10809_1108
3286.0
Non-classical monocyte nTPM: 1802.3
Samples: 5
Max nTPM: 2518.8
Min nTPM: 1268.0
P10809_1005
1787.0
P10809_1053
1774.8
P10809_1072
1663.1
P10809_1082
1268.0
P10809_1109
2518.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
776.3
Monaco sample
nTPM
Classical monocyte nTPM: 642.2
Samples: 4
Max nTPM: 792.5
Min nTPM: 410.1
RHH5313_R3680
792.5
RHH5221_R3593
410.1
RHH5250_R3622
633.9
RHH5279_R3651
732.1
Intermediate monocyte nTPM: 776.3
Samples: 4
Max nTPM: 1022.7
Min nTPM: 650.0
RHH5314_R3681
1022.7
RHH5222_R3594
650.0
RHH5251_R3623
726.0
RHH5280_R3652
706.7
Non-classical monocyte nTPM: 521.9
Samples: 4
Max nTPM: 673.8
Min nTPM: 404.7
RHH5315_R3682
673.8
RHH5223_R3595
404.7
RHH5252_R3624
563.7
RHH5281_R3653
445.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1005.3
Schmiedel sample id
TPM
Classical monocyte TPM: 1005.3
Samples: 91
Max TPM: 1399.1
Min TPM: 615.0
MONOCYTES_1
1399.1
MONOCYTES_2
1323.8
MONOCYTES_3
1285.8
MONOCYTES_4
1241.2
MONOCYTES_5
1240.8
MONOCYTES_6
1217.8
MONOCYTES_7
1213.2
MONOCYTES_8
1197.9
MONOCYTES_9
1195.5
MONOCYTES_10
1190.7
MONOCYTES_11
1180.4
MONOCYTES_12
1176.5
MONOCYTES_13
1176.1
MONOCYTES_14
1174.9
MONOCYTES_15
1170.0
MONOCYTES_16
1168.7
MONOCYTES_17
1164.3
MONOCYTES_18
1157.0
MONOCYTES_19
1154.3
MONOCYTES_20
1137.1
MONOCYTES_21
1136.0
MONOCYTES_22
1132.9
MONOCYTES_23
1129.0
MONOCYTES_24
1125.2
MONOCYTES_25
1124.7
MONOCYTES_26
1118.9
MONOCYTES_27
1114.9
MONOCYTES_28
1099.7
MONOCYTES_29
1095.1
MONOCYTES_30
1089.3
MONOCYTES_31
1088.2
MONOCYTES_32
1083.4
MONOCYTES_33
1083.1
MONOCYTES_34
1079.8
MONOCYTES_35
1077.4
MONOCYTES_36
1073.3
MONOCYTES_37
1069.4
MONOCYTES_38
1061.5
MONOCYTES_39
1054.2
MONOCYTES_40
1052.7
MONOCYTES_41
1049.8
MONOCYTES_42
1047.9
MONOCYTES_43
1035.3
MONOCYTES_44
1033.6
MONOCYTES_45
1031.3
MONOCYTES_46
1025.2
MONOCYTES_47
1018.8
MONOCYTES_48
1018.3
MONOCYTES_49
1017.5
MONOCYTES_50
1013.1
MONOCYTES_51
1011.4
MONOCYTES_52
1009.9
MONOCYTES_53
1006.2
MONOCYTES_54
1002.9
MONOCYTES_55
995.8
MONOCYTES_56
985.8
MONOCYTES_57
983.9
MONOCYTES_58
963.4
MONOCYTES_59
957.8
MONOCYTES_60
944.7
MONOCYTES_61
942.0
MONOCYTES_62
928.3
MONOCYTES_63
926.4
MONOCYTES_64
921.4
MONOCYTES_65
911.0
MONOCYTES_66
909.2
MONOCYTES_67
907.6
MONOCYTES_68
895.5
MONOCYTES_69
891.5
MONOCYTES_70
872.0
MONOCYTES_71
864.4
MONOCYTES_72
863.2
MONOCYTES_73
853.9
MONOCYTES_74
850.6
MONOCYTES_75
847.3
MONOCYTES_76
844.1
MONOCYTES_77
825.4
MONOCYTES_78
818.1
MONOCYTES_79
796.6
MONOCYTES_80
779.4
MONOCYTES_81
771.8
MONOCYTES_82
756.3
MONOCYTES_83
747.4
MONOCYTES_84
745.1
MONOCYTES_85
732.3
MONOCYTES_86
710.8
MONOCYTES_87
704.4
MONOCYTES_88
698.0
MONOCYTES_89
681.7
MONOCYTES_90
665.7
MONOCYTES_91
615.0
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Non-classical monocyte TPM: 677.3
Samples: 90
Max TPM: 1183.7
Min TPM: 259.3
M2_1
1183.7
M2_2
997.9
M2_3
993.6
M2_4
939.8
M2_5
905.1
M2_6
898.9
M2_7
880.5
M2_8
880.1
M2_9
874.6
M2_10
862.4
M2_11
862.4
M2_12
862.0
M2_13
855.6
M2_14
854.9
M2_15
854.9
M2_16
849.5
M2_17
846.4
M2_18
834.3
M2_19
826.0
M2_20
817.2
M2_21
809.2
M2_22
807.6
M2_23
805.0
M2_24
800.7
M2_25
787.5
M2_26
783.4
M2_27
781.9
M2_28
772.7
M2_29
762.8
M2_30
758.1
M2_31
754.0
M2_32
753.4
M2_33
752.9
M2_34
744.8
M2_35
743.8
M2_36
741.5
M2_37
738.9
M2_38
738.6
M2_39
735.1
M2_40
724.2
M2_41
724.2
M2_42
721.4
M2_43
721.3
M2_44
719.8
M2_45
719.6
M2_46
719.3
M2_47
717.2
M2_48
704.7
M2_49
700.2
M2_50
693.3
M2_51
690.9
M2_52
690.7
M2_53
686.5
M2_54
686.0
M2_55
674.4
M2_56
673.9
M2_57
670.9
M2_58
665.0
M2_59
647.5
M2_60
630.3
M2_61
597.8
M2_62
595.1
M2_63
586.6
M2_64
582.6
M2_65
571.3
M2_66
542.5
M2_67
527.2
M2_68
523.4
M2_69
518.4
M2_70
517.6
M2_71
501.2
M2_72
500.9
M2_73
500.3
M2_74
488.6
M2_75
476.3
M2_76
475.9
M2_77
469.5
M2_78
464.9
M2_79
464.7
M2_80
454.3
M2_81
433.3
M2_82
388.4
M2_83
387.0
M2_84
383.3
M2_85
367.4
M2_86
353.1
M2_87
351.3
M2_88
330.9
M2_89
310.9
M2_90
259.3
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