MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:116.1 nTPM
HPA Brain:133.3 nTPM
GTEx:116.1 nTPM
FANTOM5:139.9 Scaled Tags Per Million
Pig:209.1 nTPM
Mouse:104.8 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 133.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 121.9
2586 Male, age 75, left hemisphere 141.3
2828 Female, age 72, unknown 134.0
1833 Male, age 53, unknown 127.7
1827 Male, age 72, unknown 126.5
1870 Female, age 42, unknown 123.0
2666 Male, age 74, left hemisphere 120.1
1830 Male, age 51, unknown 119.8
2019 Male, age 18, unknown 111.7
2411 Female, age 72, unknown 111.6
2219 Male, age 76, both hemispheres 103.7
Dorsal raphe nucleus
nTPM: 125.9
2298 Female, age 72, unknown 135.0
1828 Male, age 53, unknown 126.1
2047 Male, age 72, unknown 124.4
2750 Male, age 76, both hemispheres 124.1
2016 Female, age 72, unknown 120.0
Inferior colliculus
nTPM: 130.7
2849 Male, age 72, unknown 134.8
1848 Female, age 42, unknown 134.5
2097 Female, age 72, unknown 129.7
1890 Male, age 53, unknown 123.8
Median raphe nucleus
nTPM: 113.7
2220 Male, age 76, midline 113.7
Periaquaductal grey, anterior
nTPM: 117.7
1947 Male, age 18, unknown 126.7
1795 Male, age 51, unknown 116.9
2502 Female, age 75, unknown 109.5
Periaquaductal grey, dorsal
nTPM: 116.6
2850 Male, age 76, both hemispheres 129.1
1840 Male, age 53, unknown 118.2
1831 Male, age 72, unknown 109.9
2464 Female, age 72, unknown 109.4
Periaquaductal grey, lateral
nTPM: 115.3
2140 Male, age 76, both hemispheres 117.8
2053 Male, age 18, unknown 116.8
2272 Male, age 74, both hemispheres 111.3
Pretectal area
nTPM: 127.1
1817 Female, age 42, unknown 149.9
1816 Male, age 51, unknown 140.0
1815 Male, age 53, unknown 137.0
1944 Female, age 72, unknown 136.6
2667 Female, age 75, unknown 134.8
2007 Male, age 72, unknown 131.2
2825 Male, age 18, unknown 120.5
2224 Female, age 72, unknown 113.9
2316 Male, age 76, right hemisphere 112.1
2273 Male, age 74, both hemispheres 112.0
2407 Male, age 75, both hemispheres 110.0
Red nucleus
nTPM: 133.3
1821 Female, age 72, unknown 155.7
2769 Male, age 72, unknown 139.5
2823 Male, age 76, right hemisphere 139.0
2725 Female, age 75, unknown 138.1
1954 Female, age 42, unknown 136.8
2503 Female, age 72, unknown 136.5
1904 Male, age 53, unknown 136.2
2227 Male, age 72, unknown 135.9
1865 Male, age 51, unknown 133.5
2588 Male, age 74, left hemisphere 122.2
2785 Male, age 18, unknown 114.0
2584 Male, age 75, left hemisphere 112.2
Substantia nigra
nTPM: 129.1
1916 Female, age 42, unknown 156.0
2699 Male, age 18, unknown 148.5
2665 Male, age 74, both hemispheres 141.2
1889 Female, age 72, unknown 138.4
1851 Male, age 51, unknown 137.3
1941 Male, age 53, unknown 122.7
2583 Male, age 75, right hemisphere 119.3
2590 Female, age 75, unknown 114.4
2241 Male, age 72, unknown 110.2
2409 Female, age 72, unknown 103.1
Superior colliculus
nTPM: 124.4
1913 Female, age 42, unknown 138.9
2668 Female, age 75, unknown 134.2
2087 Female, age 72, unknown 130.2
2261 Male, age 18, unknown 130.0
1995 Male, age 72, unknown 128.7
1796 Male, age 53, unknown 121.2
2587 Male, age 74, left hemisphere 120.0
1895 Male, age 76, right hemisphere 118.4
1839 Male, age 51, unknown 111.0
2664 Male, age 75, both hemispheres 111.0
Ventral tegmental area
nTPM: 121.8
2218 Male, age 76, both hemispheres 127.0
2410 Female, age 72, unknown 126.5
1915 Female, age 42, unknown 125.3
2223 Female, age 72, unknown 120.5
1942 Male, age 51, unknown 116.2
2021 Male, age 53, unknown 115.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 116.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 116.1
Samples: 183

Max nTPM: 275.8
Min nTPM: 56.1
Std nTPM: 35.0
Median nTPM: 109.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 275.8
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 239.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 225.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 222.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 215.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 213.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 199.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 197.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 196.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 190.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 189.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 139.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 139.9
FF:10158-103A5 76 years, female 139.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 209.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 209.1
Samples: 4

Max nTPM: 227.0
Min nTPM: 181.5
Sample A Female 217.2
Sample B Female 181.5
Sample C Male 210.7
Sample D Male 227.0
Midbrain
nTPM: 201.9
Samples: 4

Max nTPM: 284.1
Min nTPM: 154.0
Sample A Female 284.1
Sample B Female 184.9
Sample C Male 184.5
Sample D Male 154.0
Periaqueductal gray
nTPM: 174.0
Samples: 3

Max nTPM: 191.8
Min nTPM: 156.3
Sample B Female 174.0
Sample C Male 191.8
Sample D Male 156.3
Superior colliculi
nTPM: 185.0
Samples: 4

Max nTPM: 203.6
Min nTPM: 160.7
Sample A Female 203.6
Sample B Female 160.7
Sample C Male 185.5
Sample D Male 190.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 104.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 104.8
Samples: 4

Max nTPM: 113.4
Min nTPM: 98.1
Sample A Male 113.4
Sample B Male 100.6
Sample C Female 98.1
Sample D Female 106.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71486970 Antisense, RP_050913_01_A08, Mouse strain C57BL/6J (56 days, male) 0.0

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