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BETA
  • SUMMARY

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  • RPL34
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:7820.0 nTPM
Monaco:772.1 nTPM
Schmiedel:587.3 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

7820.0
HPA sample nTPM
Memory B-cell
nTPM: 7820.0
Samples: 6

Max nTPM: 16444.0
Min nTPM: 4459.9
P10809_1017 4459.9
P10809_1025 6464.4
P10809_1044 16444.0
P10809_1063 7336.2
P10809_1092 5943.9
P10809_1105 6271.4
Naive B-cell
nTPM: 6495.2
Samples: 6

Max nTPM: 11314.6
Min nTPM: 4541.6
P10809_1011 4541.6
P10809_1029 5329.1
P10809_1048 11314.6
P10809_1067 6630.9
P10809_1091 5369.1
P10809_1104 5785.8

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

772.1
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 772.2
Samples: 4

Max nTPM: 1547.0
Min nTPM: 165.8
RHH5310_R3677 554.7
RHH5218_R3590 165.8
RHH5247_R3619 1547.0
RHH5276_R3648 821.1
Naive B-cell
nTPM: 659.8
Samples: 4

Max nTPM: 1255.1
Min nTPM: 239.9
RHH5308_R3675 644.3
RHH5216_R3588 239.9
RHH5245_R3617 1255.1
RHH5274_R3646 499.9
Non-switched memory B-cell
nTPM: 519.6
Samples: 4

Max nTPM: 889.6
Min nTPM: 211.9
RHH5309_R3676 676.4
RHH5217_R3589 211.9
RHH5246_R3618 300.6
RHH5275_R3647 889.6
Plasmablast
nTPM: 410.7
Samples: 4

Max nTPM: 521.6
Min nTPM: 211.0
RHH5312_R3679 521.6
RHH5220_R3592 211.0
RHH5249_R3621 418.3
RHH5278_R3650 491.9
Switched memory B-cell
nTPM: 418.2
Samples: 4

Max nTPM: 618.0
Min nTPM: 247.0
RHH5311_R3678 517.5
RHH5219_R3591 290.3
RHH5248_R3620 247.0
RHH5277_R3649 618.0

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

587.3
Schmiedel sample id TPM
Naive B-cell
TPM: 587.3
Samples: 91

Max TPM: 723.2
Min TPM: 184.4
B_CELL_NAIVE_1 723.2
B_CELL_NAIVE_2 719.1
B_CELL_NAIVE_3 688.4
B_CELL_NAIVE_4 686.2
B_CELL_NAIVE_5 685.9
B_CELL_NAIVE_6 685.3
B_CELL_NAIVE_7 682.5
B_CELL_NAIVE_8 678.8
B_CELL_NAIVE_9 675.9
B_CELL_NAIVE_10 673.4
B_CELL_NAIVE_11 666.3
B_CELL_NAIVE_12 666.0
B_CELL_NAIVE_13 663.3
B_CELL_NAIVE_14 661.1
B_CELL_NAIVE_15 655.5
B_CELL_NAIVE_16 651.5
B_CELL_NAIVE_17 649.7
B_CELL_NAIVE_18 648.6
B_CELL_NAIVE_19 648.5
B_CELL_NAIVE_20 646.9
B_CELL_NAIVE_21 645.3
B_CELL_NAIVE_22 636.6
B_CELL_NAIVE_23 635.8
B_CELL_NAIVE_24 635.5
B_CELL_NAIVE_25 634.7
B_CELL_NAIVE_26 631.0
B_CELL_NAIVE_27 625.1
B_CELL_NAIVE_28 624.5
B_CELL_NAIVE_29 622.8
B_CELL_NAIVE_30 621.7
B_CELL_NAIVE_31 617.6
B_CELL_NAIVE_32 614.9
B_CELL_NAIVE_33 614.1
B_CELL_NAIVE_34 613.4
B_CELL_NAIVE_35 612.9
B_CELL_NAIVE_36 611.9
B_CELL_NAIVE_37 610.7
B_CELL_NAIVE_38 608.8
B_CELL_NAIVE_39 607.8
B_CELL_NAIVE_40 607.7
B_CELL_NAIVE_41 607.6
B_CELL_NAIVE_42 606.2
B_CELL_NAIVE_43 605.4
B_CELL_NAIVE_44 604.2
B_CELL_NAIVE_45 604.1
B_CELL_NAIVE_46 599.7
B_CELL_NAIVE_47 596.2
B_CELL_NAIVE_48 593.2
B_CELL_NAIVE_49 590.5
B_CELL_NAIVE_50 589.5
B_CELL_NAIVE_51 587.0
B_CELL_NAIVE_52 580.4
B_CELL_NAIVE_53 579.2
B_CELL_NAIVE_54 577.1
B_CELL_NAIVE_55 575.0
B_CELL_NAIVE_56 568.8
B_CELL_NAIVE_57 568.7
B_CELL_NAIVE_58 567.0
B_CELL_NAIVE_59 566.2
B_CELL_NAIVE_60 564.1
B_CELL_NAIVE_61 558.2
B_CELL_NAIVE_62 554.6
B_CELL_NAIVE_63 554.3
B_CELL_NAIVE_64 554.0
B_CELL_NAIVE_65 550.5
B_CELL_NAIVE_66 549.9
B_CELL_NAIVE_67 548.6
B_CELL_NAIVE_68 548.0
B_CELL_NAIVE_69 546.1
B_CELL_NAIVE_70 541.9
B_CELL_NAIVE_71 538.3
B_CELL_NAIVE_72 538.0
B_CELL_NAIVE_73 533.5
B_CELL_NAIVE_74 531.7
B_CELL_NAIVE_75 529.9
B_CELL_NAIVE_76 525.5
B_CELL_NAIVE_77 524.8
B_CELL_NAIVE_78 524.8
B_CELL_NAIVE_79 522.8
B_CELL_NAIVE_80 521.0
B_CELL_NAIVE_81 520.8
B_CELL_NAIVE_82 514.7
B_CELL_NAIVE_83 514.0
B_CELL_NAIVE_84 508.6
B_CELL_NAIVE_85 507.7
B_CELL_NAIVE_86 491.6
B_CELL_NAIVE_87 489.2
B_CELL_NAIVE_88 460.1
B_CELL_NAIVE_89 424.8
B_CELL_NAIVE_90 413.8
B_CELL_NAIVE_91 184.4
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