A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3580.3
nTPM
Monaco:
236.8
nTPM
Schmiedel:
322.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3580.3
HPA sample
nTPM
NK-cell nTPM: 3580.3
Samples: 6
Max nTPM: 4863.3
Min nTPM: 2257.8
P10809_1013
3017.4
P10809_1033
4582.3
P10809_1052
3451.6
P10809_1071
4863.3
P10809_1093
2257.8
P10809_1103
3309.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
236.8
Monaco sample
nTPM
NK-cell nTPM: 236.8
Samples: 4
Max nTPM: 270.0
Min nTPM: 190.4
RHH5316_R3683
231.3
RHH5224_R3596
190.4
RHH5253_R3625
270.0
RHH5282_R3654
255.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
322.9
Schmiedel sample id
TPM
NK-cell TPM: 322.9
Samples: 90
Max TPM: 464.4
Min TPM: 190.3
NK_1
464.4
NK_2
450.0
NK_3
430.1
NK_4
415.0
NK_5
411.6
NK_6
405.0
NK_7
403.7
NK_8
402.9
NK_9
396.6
NK_10
392.9
NK_11
388.5
NK_12
378.3
NK_13
374.8
NK_14
372.6
NK_15
367.9
NK_16
366.7
NK_17
364.0
NK_18
361.3
NK_19
361.1
NK_20
359.7
NK_21
357.0
NK_22
353.9
NK_23
352.6
NK_24
350.7
NK_25
350.3
NK_26
349.8
NK_27
349.3
NK_28
347.6
NK_29
344.5
NK_30
344.5
NK_31
344.1
NK_32
343.0
NK_33
342.9
NK_34
339.6
NK_35
339.6
NK_36
339.0
NK_37
338.4
NK_38
336.1
NK_39
336.1
NK_40
334.3
NK_41
331.5
NK_42
331.4
NK_43
330.1
NK_44
325.8
NK_45
325.2
NK_46
324.4
NK_47
323.8
NK_48
318.5
NK_49
317.1
NK_50
316.6
NK_51
314.2
NK_52
312.9
NK_53
310.9
NK_54
309.7
NK_55
308.5
NK_56
307.2
NK_57
307.1
NK_58
306.0
NK_59
305.0
NK_60
304.1
NK_61
301.1
NK_62
300.6
NK_63
295.5
NK_64
292.9
NK_65
292.0
NK_66
290.8
NK_67
290.3
NK_68
290.2
NK_69
286.8
NK_70
286.3
NK_71
278.3
NK_72
273.0
NK_73
272.6
NK_74
271.9
NK_75
270.9
NK_76
269.4
NK_77
269.2
NK_78
268.5
NK_79
265.2
NK_80
264.1
NK_81
257.0
NK_82
255.2
NK_83
252.8
NK_84
251.8
NK_85
251.8
NK_86
235.8
NK_87
218.6
NK_88
215.6
NK_89
214.0
NK_90
190.3
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