A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3035.7
nTPM
Monaco:
378.9
nTPM
Schmiedel:
302.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3035.7
HPA sample
nTPM
Classical monocyte nTPM: 3035.7
Samples: 6
Max nTPM: 5217.0
Min nTPM: 2031.2
P10809_1003
5217.0
P10809_1020
2031.2
P10809_1039
3100.9
P10809_1058
2828.3
P10809_1080
2043.8
P10809_1107
2993.0
Intermediate monocyte nTPM: 2248.1
Samples: 6
Max nTPM: 3277.7
Min nTPM: 1427.3
P10809_1004
1688.1
P10809_1023
2524.5
P10809_1042
2310.8
P10809_1061
1427.3
P10809_1081
2260.0
P10809_1108
3277.7
Non-classical monocyte nTPM: 1995.9
Samples: 5
Max nTPM: 2657.4
Min nTPM: 1397.4
P10809_1005
1893.7
P10809_1053
1860.7
P10809_1072
1397.4
P10809_1082
2170.1
P10809_1109
2657.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
378.9
Monaco sample
nTPM
Classical monocyte nTPM: 239.5
Samples: 4
Max nTPM: 317.5
Min nTPM: 148.2
RHH5313_R3680
317.5
RHH5221_R3593
234.2
RHH5250_R3622
148.2
RHH5279_R3651
258.1
Intermediate monocyte nTPM: 378.9
Samples: 4
Max nTPM: 483.8
Min nTPM: 231.2
RHH5314_R3681
343.1
RHH5222_R3594
483.8
RHH5251_R3623
457.4
RHH5280_R3652
231.2
Non-classical monocyte nTPM: 297.5
Samples: 4
Max nTPM: 421.2
Min nTPM: 155.6
RHH5315_R3682
421.2
RHH5223_R3595
306.7
RHH5252_R3624
306.6
RHH5281_R3653
155.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
302.8
Schmiedel sample id
TPM
Classical monocyte TPM: 302.8
Samples: 91
Max TPM: 398.5
Min TPM: 231.5
MONOCYTES_1
398.5
MONOCYTES_2
382.4
MONOCYTES_3
380.3
MONOCYTES_4
376.7
MONOCYTES_5
365.3
MONOCYTES_6
356.0
MONOCYTES_7
351.7
MONOCYTES_8
345.9
MONOCYTES_9
343.5
MONOCYTES_10
342.8
MONOCYTES_11
336.8
MONOCYTES_12
332.5
MONOCYTES_13
330.8
MONOCYTES_14
330.7
MONOCYTES_15
330.5
MONOCYTES_16
329.6
MONOCYTES_17
329.0
MONOCYTES_18
324.9
MONOCYTES_19
321.6
MONOCYTES_20
320.5
MONOCYTES_21
320.4
MONOCYTES_22
320.1
MONOCYTES_23
318.2
MONOCYTES_24
318.0
MONOCYTES_25
318.0
MONOCYTES_26
317.9
MONOCYTES_27
317.9
MONOCYTES_28
316.5
MONOCYTES_29
315.8
MONOCYTES_30
314.5
MONOCYTES_31
312.1
MONOCYTES_32
310.8
MONOCYTES_33
310.2
MONOCYTES_34
309.6
MONOCYTES_35
309.5
MONOCYTES_36
308.4
MONOCYTES_37
305.8
MONOCYTES_38
304.4
MONOCYTES_39
304.2
MONOCYTES_40
304.0
MONOCYTES_41
304.0
MONOCYTES_42
303.6
MONOCYTES_43
302.1
MONOCYTES_44
301.1
MONOCYTES_45
300.5
MONOCYTES_46
299.8
MONOCYTES_47
297.5
MONOCYTES_48
296.9
MONOCYTES_49
296.2
MONOCYTES_50
295.1
MONOCYTES_51
294.7
MONOCYTES_52
294.6
MONOCYTES_53
294.1
MONOCYTES_54
294.0
MONOCYTES_55
293.0
MONOCYTES_56
292.8
MONOCYTES_57
291.7
MONOCYTES_58
289.4
MONOCYTES_59
289.2
MONOCYTES_60
288.6
MONOCYTES_61
288.4
MONOCYTES_62
287.9
MONOCYTES_63
287.8
MONOCYTES_64
287.1
MONOCYTES_65
285.8
MONOCYTES_66
285.7
MONOCYTES_67
285.0
MONOCYTES_68
283.9
MONOCYTES_69
282.6
MONOCYTES_70
282.4
MONOCYTES_71
282.2
MONOCYTES_72
280.5
MONOCYTES_73
279.8
MONOCYTES_74
279.2
MONOCYTES_75
279.1
MONOCYTES_76
277.9
MONOCYTES_77
273.4
MONOCYTES_78
272.2
MONOCYTES_79
272.0
MONOCYTES_80
271.9
MONOCYTES_81
266.9
MONOCYTES_82
266.7
MONOCYTES_83
266.3
MONOCYTES_84
264.9
MONOCYTES_85
263.7
MONOCYTES_86
260.4
MONOCYTES_87
255.9
MONOCYTES_88
254.5
MONOCYTES_89
249.8
MONOCYTES_90
244.1
MONOCYTES_91
231.5
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Non-classical monocyte TPM: 266.3
Samples: 90
Max TPM: 362.6
Min TPM: 200.7
M2_1
362.6
M2_2
359.1
M2_3
338.4
M2_4
325.9
M2_5
324.4
M2_6
324.2
M2_7
312.7
M2_8
308.0
M2_9
306.9
M2_10
300.0
M2_11
298.4
M2_12
297.7
M2_13
296.9
M2_14
296.5
M2_15
296.0
M2_16
294.7
M2_17
294.1
M2_18
293.6
M2_19
290.5
M2_20
289.2
M2_21
286.1
M2_22
286.1
M2_23
281.8
M2_24
281.6
M2_25
280.4
M2_26
279.7
M2_27
279.2
M2_28
278.8
M2_29
277.7
M2_30
277.5
M2_31
276.0
M2_32
276.0
M2_33
273.9
M2_34
272.9
M2_35
272.7
M2_36
272.6
M2_37
272.5
M2_38
271.5
M2_39
270.7
M2_40
270.4
M2_41
269.6
M2_42
269.2
M2_43
268.4
M2_44
267.7
M2_45
263.7
M2_46
263.7
M2_47
263.5
M2_48
263.0
M2_49
262.9
M2_50
262.6
M2_51
260.1
M2_52
259.4
M2_53
259.3
M2_54
258.6
M2_55
257.6
M2_56
257.6
M2_57
256.9
M2_58
251.3
M2_59
251.0
M2_60
250.9
M2_61
250.7
M2_62
250.6
M2_63
246.1
M2_64
246.0
M2_65
245.4
M2_66
245.2
M2_67
245.1
M2_68
244.8
M2_69
243.7
M2_70
242.6
M2_71
240.3
M2_72
240.0
M2_73
236.8
M2_74
235.9
M2_75
235.4
M2_76
235.0
M2_77
234.8
M2_78
233.5
M2_79
232.3
M2_80
232.2
M2_81
230.0
M2_82
229.8
M2_83
224.6
M2_84
223.0
M2_85
219.3
M2_86
219.2
M2_87
216.5
M2_88
216.0
M2_89
207.2
M2_90
200.7
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