A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3734.9
nTPM
Monaco:
892.5
nTPM
Schmiedel:
1137.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3734.9
HPA sample
nTPM
Memory B-cell nTPM: 3734.9
Samples: 6
Max nTPM: 4094.3
Min nTPM: 3285.6
P10809_1017
4094.3
P10809_1025
3555.5
P10809_1044
3967.2
P10809_1063
3622.7
P10809_1092
3285.6
P10809_1105
3884.1
Naive B-cell nTPM: 3259.8
Samples: 6
Max nTPM: 3835.3
Min nTPM: 2815.5
P10809_1011
3459.8
P10809_1029
2815.5
P10809_1048
3092.6
P10809_1067
3500.1
P10809_1091
2855.2
P10809_1104
3835.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
892.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 879.4
Samples: 4
Max nTPM: 1419.7
Min nTPM: 222.9
RHH5310_R3677
856.2
RHH5218_R3590
222.9
RHH5247_R3619
1419.7
RHH5276_R3648
1018.8
Naive B-cell nTPM: 892.5
Samples: 4
Max nTPM: 1527.9
Min nTPM: 343.5
RHH5308_R3675
993.6
RHH5216_R3588
343.5
RHH5245_R3617
1527.9
RHH5274_R3646
704.9
Non-switched memory B-cell nTPM: 663.8
Samples: 4
Max nTPM: 1043.1
Min nTPM: 339.3
RHH5309_R3676
907.1
RHH5217_R3589
339.3
RHH5246_R3618
365.7
RHH5275_R3647
1043.1
Plasmablast nTPM: 809.8
Samples: 4
Max nTPM: 1053.3
Min nTPM: 420.7
RHH5312_R3679
1053.3
RHH5220_R3592
420.7
RHH5249_R3621
795.6
RHH5278_R3650
969.6
Switched memory B-cell nTPM: 640.9
Samples: 4
Max nTPM: 882.8
Min nTPM: 352.5
RHH5311_R3678
882.8
RHH5219_R3591
504.0
RHH5248_R3620
352.5
RHH5277_R3649
824.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1137.3
Schmiedel sample id
TPM
Naive B-cell TPM: 1137.3
Samples: 91
Max TPM: 1401.3
Min TPM: 494.1
B_CELL_NAIVE_1
1401.3
B_CELL_NAIVE_2
1352.4
B_CELL_NAIVE_3
1330.5
B_CELL_NAIVE_4
1329.8
B_CELL_NAIVE_5
1328.6
B_CELL_NAIVE_6
1326.9
B_CELL_NAIVE_7
1288.6
B_CELL_NAIVE_8
1286.1
B_CELL_NAIVE_9
1269.8
B_CELL_NAIVE_10
1258.5
B_CELL_NAIVE_11
1243.4
B_CELL_NAIVE_12
1234.8
B_CELL_NAIVE_13
1233.2
B_CELL_NAIVE_14
1231.8
B_CELL_NAIVE_15
1228.8
B_CELL_NAIVE_16
1226.3
B_CELL_NAIVE_17
1223.5
B_CELL_NAIVE_18
1218.7
B_CELL_NAIVE_19
1218.0
B_CELL_NAIVE_20
1217.6
B_CELL_NAIVE_21
1215.5
B_CELL_NAIVE_22
1214.7
B_CELL_NAIVE_23
1210.9
B_CELL_NAIVE_24
1209.5
B_CELL_NAIVE_25
1208.4
B_CELL_NAIVE_26
1208.2
B_CELL_NAIVE_27
1205.2
B_CELL_NAIVE_28
1202.7
B_CELL_NAIVE_29
1200.9
B_CELL_NAIVE_30
1200.7
B_CELL_NAIVE_31
1196.8
B_CELL_NAIVE_32
1196.7
B_CELL_NAIVE_33
1195.9
B_CELL_NAIVE_34
1188.7
B_CELL_NAIVE_35
1186.3
B_CELL_NAIVE_36
1184.6
B_CELL_NAIVE_37
1183.3
B_CELL_NAIVE_38
1179.3
B_CELL_NAIVE_39
1175.5
B_CELL_NAIVE_40
1169.8
B_CELL_NAIVE_41
1164.3
B_CELL_NAIVE_42
1160.5
B_CELL_NAIVE_43
1153.0
B_CELL_NAIVE_44
1151.2
B_CELL_NAIVE_45
1150.8
B_CELL_NAIVE_46
1147.7
B_CELL_NAIVE_47
1143.4
B_CELL_NAIVE_48
1143.1
B_CELL_NAIVE_49
1141.7
B_CELL_NAIVE_50
1137.2
B_CELL_NAIVE_51
1125.4
B_CELL_NAIVE_52
1120.9
B_CELL_NAIVE_53
1119.5
B_CELL_NAIVE_54
1114.6
B_CELL_NAIVE_55
1113.1
B_CELL_NAIVE_56
1109.6
B_CELL_NAIVE_57
1103.8
B_CELL_NAIVE_58
1102.9
B_CELL_NAIVE_59
1102.7
B_CELL_NAIVE_60
1101.6
B_CELL_NAIVE_61
1096.2
B_CELL_NAIVE_62
1093.9
B_CELL_NAIVE_63
1092.0
B_CELL_NAIVE_64
1085.8
B_CELL_NAIVE_65
1077.2
B_CELL_NAIVE_66
1076.5
B_CELL_NAIVE_67
1073.4
B_CELL_NAIVE_68
1068.1
B_CELL_NAIVE_69
1067.7
B_CELL_NAIVE_70
1061.4
B_CELL_NAIVE_71
1058.2
B_CELL_NAIVE_72
1055.8
B_CELL_NAIVE_73
1055.3
B_CELL_NAIVE_74
1049.0
B_CELL_NAIVE_75
1047.0
B_CELL_NAIVE_76
1038.6
B_CELL_NAIVE_77
1035.4
B_CELL_NAIVE_78
1034.8
B_CELL_NAIVE_79
1029.1
B_CELL_NAIVE_80
1027.9
B_CELL_NAIVE_81
1022.5
B_CELL_NAIVE_82
1005.5
B_CELL_NAIVE_83
1001.2
B_CELL_NAIVE_84
1000.2
B_CELL_NAIVE_85
999.8
B_CELL_NAIVE_86
988.5
B_CELL_NAIVE_87
972.5
B_CELL_NAIVE_88
967.0
B_CELL_NAIVE_89
915.8
B_CELL_NAIVE_90
912.5
B_CELL_NAIVE_91
494.1
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