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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

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  • IMMUNE

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  • RPS13
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:3734.9 nTPM
Monaco:892.5 nTPM
Schmiedel:1137.3 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

3734.9
HPA sample nTPM
Memory B-cell
nTPM: 3734.9
Samples: 6

Max nTPM: 4094.3
Min nTPM: 3285.6
P10809_1017 4094.3
P10809_1025 3555.5
P10809_1044 3967.2
P10809_1063 3622.7
P10809_1092 3285.6
P10809_1105 3884.1
Naive B-cell
nTPM: 3259.8
Samples: 6

Max nTPM: 3835.3
Min nTPM: 2815.5
P10809_1011 3459.8
P10809_1029 2815.5
P10809_1048 3092.6
P10809_1067 3500.1
P10809_1091 2855.2
P10809_1104 3835.3

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

892.5
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 879.4
Samples: 4

Max nTPM: 1419.7
Min nTPM: 222.9
RHH5310_R3677 856.2
RHH5218_R3590 222.9
RHH5247_R3619 1419.7
RHH5276_R3648 1018.8
Naive B-cell
nTPM: 892.5
Samples: 4

Max nTPM: 1527.9
Min nTPM: 343.5
RHH5308_R3675 993.6
RHH5216_R3588 343.5
RHH5245_R3617 1527.9
RHH5274_R3646 704.9
Non-switched memory B-cell
nTPM: 663.8
Samples: 4

Max nTPM: 1043.1
Min nTPM: 339.3
RHH5309_R3676 907.1
RHH5217_R3589 339.3
RHH5246_R3618 365.7
RHH5275_R3647 1043.1
Plasmablast
nTPM: 809.8
Samples: 4

Max nTPM: 1053.3
Min nTPM: 420.7
RHH5312_R3679 1053.3
RHH5220_R3592 420.7
RHH5249_R3621 795.6
RHH5278_R3650 969.6
Switched memory B-cell
nTPM: 640.9
Samples: 4

Max nTPM: 882.8
Min nTPM: 352.5
RHH5311_R3678 882.8
RHH5219_R3591 504.0
RHH5248_R3620 352.5
RHH5277_R3649 824.1

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

1137.3
Schmiedel sample id TPM
Naive B-cell
TPM: 1137.3
Samples: 91

Max TPM: 1401.3
Min TPM: 494.1
B_CELL_NAIVE_1 1401.3
B_CELL_NAIVE_2 1352.4
B_CELL_NAIVE_3 1330.5
B_CELL_NAIVE_4 1329.8
B_CELL_NAIVE_5 1328.6
B_CELL_NAIVE_6 1326.9
B_CELL_NAIVE_7 1288.6
B_CELL_NAIVE_8 1286.1
B_CELL_NAIVE_9 1269.8
B_CELL_NAIVE_10 1258.5
B_CELL_NAIVE_11 1243.4
B_CELL_NAIVE_12 1234.8
B_CELL_NAIVE_13 1233.2
B_CELL_NAIVE_14 1231.8
B_CELL_NAIVE_15 1228.8
B_CELL_NAIVE_16 1226.3
B_CELL_NAIVE_17 1223.5
B_CELL_NAIVE_18 1218.7
B_CELL_NAIVE_19 1218.0
B_CELL_NAIVE_20 1217.6
B_CELL_NAIVE_21 1215.5
B_CELL_NAIVE_22 1214.7
B_CELL_NAIVE_23 1210.9
B_CELL_NAIVE_24 1209.5
B_CELL_NAIVE_25 1208.4
B_CELL_NAIVE_26 1208.2
B_CELL_NAIVE_27 1205.2
B_CELL_NAIVE_28 1202.7
B_CELL_NAIVE_29 1200.9
B_CELL_NAIVE_30 1200.7
B_CELL_NAIVE_31 1196.8
B_CELL_NAIVE_32 1196.7
B_CELL_NAIVE_33 1195.9
B_CELL_NAIVE_34 1188.7
B_CELL_NAIVE_35 1186.3
B_CELL_NAIVE_36 1184.6
B_CELL_NAIVE_37 1183.3
B_CELL_NAIVE_38 1179.3
B_CELL_NAIVE_39 1175.5
B_CELL_NAIVE_40 1169.8
B_CELL_NAIVE_41 1164.3
B_CELL_NAIVE_42 1160.5
B_CELL_NAIVE_43 1153.0
B_CELL_NAIVE_44 1151.2
B_CELL_NAIVE_45 1150.8
B_CELL_NAIVE_46 1147.7
B_CELL_NAIVE_47 1143.4
B_CELL_NAIVE_48 1143.1
B_CELL_NAIVE_49 1141.7
B_CELL_NAIVE_50 1137.2
B_CELL_NAIVE_51 1125.4
B_CELL_NAIVE_52 1120.9
B_CELL_NAIVE_53 1119.5
B_CELL_NAIVE_54 1114.6
B_CELL_NAIVE_55 1113.1
B_CELL_NAIVE_56 1109.6
B_CELL_NAIVE_57 1103.8
B_CELL_NAIVE_58 1102.9
B_CELL_NAIVE_59 1102.7
B_CELL_NAIVE_60 1101.6
B_CELL_NAIVE_61 1096.2
B_CELL_NAIVE_62 1093.9
B_CELL_NAIVE_63 1092.0
B_CELL_NAIVE_64 1085.8
B_CELL_NAIVE_65 1077.2
B_CELL_NAIVE_66 1076.5
B_CELL_NAIVE_67 1073.4
B_CELL_NAIVE_68 1068.1
B_CELL_NAIVE_69 1067.7
B_CELL_NAIVE_70 1061.4
B_CELL_NAIVE_71 1058.2
B_CELL_NAIVE_72 1055.8
B_CELL_NAIVE_73 1055.3
B_CELL_NAIVE_74 1049.0
B_CELL_NAIVE_75 1047.0
B_CELL_NAIVE_76 1038.6
B_CELL_NAIVE_77 1035.4
B_CELL_NAIVE_78 1034.8
B_CELL_NAIVE_79 1029.1
B_CELL_NAIVE_80 1027.9
B_CELL_NAIVE_81 1022.5
B_CELL_NAIVE_82 1005.5
B_CELL_NAIVE_83 1001.2
B_CELL_NAIVE_84 1000.2
B_CELL_NAIVE_85 999.8
B_CELL_NAIVE_86 988.5
B_CELL_NAIVE_87 972.5
B_CELL_NAIVE_88 967.0
B_CELL_NAIVE_89 915.8
B_CELL_NAIVE_90 912.5
B_CELL_NAIVE_91 494.1
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