A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2498.9
nTPM
Monaco:
614.9
nTPM
Schmiedel:
780.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2498.9
HPA sample
nTPM
Classical monocyte nTPM: 2499.0
Samples: 6
Max nTPM: 4759.5
Min nTPM: 1739.4
P10809_1003
4759.5
P10809_1020
1786.1
P10809_1039
1957.0
P10809_1058
2154.5
P10809_1080
1739.4
P10809_1107
2597.3
Intermediate monocyte nTPM: 1812.2
Samples: 6
Max nTPM: 2798.0
Min nTPM: 1207.3
P10809_1004
1497.0
P10809_1023
1968.7
P10809_1042
1710.8
P10809_1061
1207.3
P10809_1081
1691.4
P10809_1108
2798.0
Non-classical monocyte nTPM: 1491.5
Samples: 5
Max nTPM: 2151.1
Min nTPM: 816.3
P10809_1005
1789.8
P10809_1053
1228.4
P10809_1072
816.3
P10809_1082
1471.8
P10809_1109
2151.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
614.9
Monaco sample
nTPM
Classical monocyte nTPM: 499.1
Samples: 4
Max nTPM: 655.9
Min nTPM: 384.1
RHH5313_R3680
655.9
RHH5221_R3593
479.3
RHH5250_R3622
384.1
RHH5279_R3651
476.9
Intermediate monocyte nTPM: 614.9
Samples: 4
Max nTPM: 715.2
Min nTPM: 387.4
RHH5314_R3681
715.2
RHH5222_R3594
648.3
RHH5251_R3623
708.8
RHH5280_R3652
387.4
Non-classical monocyte nTPM: 431.4
Samples: 4
Max nTPM: 555.5
Min nTPM: 270.6
RHH5315_R3682
555.5
RHH5223_R3595
409.1
RHH5252_R3624
490.5
RHH5281_R3653
270.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
780.2
Schmiedel sample id
TPM
Classical monocyte TPM: 780.2
Samples: 91
Max TPM: 943.8
Min TPM: 630.0
MONOCYTES_1
943.8
MONOCYTES_2
921.2
MONOCYTES_3
909.6
MONOCYTES_4
900.9
MONOCYTES_5
892.0
MONOCYTES_6
875.0
MONOCYTES_7
874.3
MONOCYTES_8
869.9
MONOCYTES_9
865.8
MONOCYTES_10
863.9
MONOCYTES_11
858.4
MONOCYTES_12
852.6
MONOCYTES_13
851.7
MONOCYTES_14
838.4
MONOCYTES_15
836.5
MONOCYTES_16
832.5
MONOCYTES_17
832.3
MONOCYTES_18
831.1
MONOCYTES_19
829.6
MONOCYTES_20
829.3
MONOCYTES_21
828.1
MONOCYTES_22
827.7
MONOCYTES_23
827.0
MONOCYTES_24
819.6
MONOCYTES_25
815.8
MONOCYTES_26
811.7
MONOCYTES_27
808.7
MONOCYTES_28
808.4
MONOCYTES_29
807.3
MONOCYTES_30
805.8
MONOCYTES_31
805.2
MONOCYTES_32
803.9
MONOCYTES_33
802.5
MONOCYTES_34
800.0
MONOCYTES_35
799.4
MONOCYTES_36
794.6
MONOCYTES_37
793.9
MONOCYTES_38
793.1
MONOCYTES_39
792.7
MONOCYTES_40
792.4
MONOCYTES_41
792.4
MONOCYTES_42
791.3
MONOCYTES_43
788.2
MONOCYTES_44
786.2
MONOCYTES_45
781.8
MONOCYTES_46
778.6
MONOCYTES_47
778.6
MONOCYTES_48
773.1
MONOCYTES_49
768.9
MONOCYTES_50
768.5
MONOCYTES_51
768.4
MONOCYTES_52
767.8
MONOCYTES_53
767.1
MONOCYTES_54
766.7
MONOCYTES_55
761.7
MONOCYTES_56
761.1
MONOCYTES_57
759.0
MONOCYTES_58
756.8
MONOCYTES_59
756.7
MONOCYTES_60
756.5
MONOCYTES_61
753.7
MONOCYTES_62
750.2
MONOCYTES_63
748.7
MONOCYTES_64
747.4
MONOCYTES_65
747.1
MONOCYTES_66
746.0
MONOCYTES_67
742.9
MONOCYTES_68
740.7
MONOCYTES_69
740.5
MONOCYTES_70
739.8
MONOCYTES_71
735.2
MONOCYTES_72
734.6
MONOCYTES_73
729.3
MONOCYTES_74
728.4
MONOCYTES_75
728.2
MONOCYTES_76
724.1
MONOCYTES_77
723.9
MONOCYTES_78
723.8
MONOCYTES_79
717.1
MONOCYTES_80
715.9
MONOCYTES_81
714.9
MONOCYTES_82
702.6
MONOCYTES_83
697.4
MONOCYTES_84
687.2
MONOCYTES_85
686.6
MONOCYTES_86
675.7
MONOCYTES_87
668.9
MONOCYTES_88
660.8
MONOCYTES_89
642.8
MONOCYTES_90
637.7
MONOCYTES_91
630.0
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Non-classical monocyte TPM: 630.4
Samples: 90
Max TPM: 821.6
Min TPM: 517.4
M2_1
821.6
M2_2
780.4
M2_3
743.5
M2_4
737.7
M2_5
725.1
M2_6
718.4
M2_7
716.0
M2_8
713.7
M2_9
713.0
M2_10
711.8
M2_11
701.2
M2_12
695.4
M2_13
692.3
M2_14
687.5
M2_15
684.9
M2_16
683.5
M2_17
679.2
M2_18
676.0
M2_19
675.0
M2_20
673.7
M2_21
673.6
M2_22
673.3
M2_23
665.0
M2_24
664.1
M2_25
662.0
M2_26
660.4
M2_27
656.9
M2_28
655.7
M2_29
654.0
M2_30
653.8
M2_31
651.5
M2_32
651.0
M2_33
649.5
M2_34
648.2
M2_35
642.4
M2_36
642.1
M2_37
639.2
M2_38
638.9
M2_39
637.1
M2_40
634.2
M2_41
633.1
M2_42
632.9
M2_43
632.6
M2_44
629.2
M2_45
629.1
M2_46
625.7
M2_47
624.1
M2_48
622.9
M2_49
622.3
M2_50
620.1
M2_51
619.0
M2_52
618.7
M2_53
616.9
M2_54
616.6
M2_55
613.7
M2_56
607.9
M2_57
606.5
M2_58
606.5
M2_59
606.2
M2_60
604.5
M2_61
603.4
M2_62
603.0
M2_63
602.0
M2_64
601.4
M2_65
600.8
M2_66
599.0
M2_67
598.8
M2_68
594.9
M2_69
592.6
M2_70
584.9
M2_71
584.3
M2_72
583.2
M2_73
583.1
M2_74
580.8
M2_75
570.3
M2_76
566.9
M2_77
566.3
M2_78
562.6
M2_79
557.6
M2_80
557.4
M2_81
555.5
M2_82
548.9
M2_83
544.9
M2_84
539.8
M2_85
539.2
M2_86
535.3
M2_87
534.7
M2_88
531.5
M2_89
527.6
M2_90
517.4
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