A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1884.7
nTPM
Monaco:
255.7
nTPM
Schmiedel:
523.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1884.7
HPA sample
nTPM
NK-cell nTPM: 1884.7
Samples: 6
Max nTPM: 2416.0
Min nTPM: 956.0
P10809_1013
2416.0
P10809_1033
1954.5
P10809_1052
1614.7
P10809_1071
2338.2
P10809_1093
956.0
P10809_1103
2028.8
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
255.7
Monaco sample
nTPM
NK-cell nTPM: 255.7
Samples: 4
Max nTPM: 273.6
Min nTPM: 214.9
RHH5316_R3683
266.6
RHH5224_R3596
214.9
RHH5253_R3625
267.6
RHH5282_R3654
273.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
523.8
Schmiedel sample id
TPM
NK-cell TPM: 523.8
Samples: 90
Max TPM: 765.4
Min TPM: 330.0
NK_1
765.4
NK_2
700.8
NK_3
697.6
NK_4
662.8
NK_5
646.6
NK_6
643.4
NK_7
633.4
NK_8
633.3
NK_9
624.1
NK_10
623.3
NK_11
623.2
NK_12
620.0
NK_13
617.0
NK_14
614.6
NK_15
607.2
NK_16
597.8
NK_17
597.8
NK_18
594.3
NK_19
584.7
NK_20
579.8
NK_21
578.9
NK_22
578.2
NK_23
575.0
NK_24
573.4
NK_25
570.4
NK_26
570.1
NK_27
568.2
NK_28
567.4
NK_29
562.5
NK_30
561.7
NK_31
554.9
NK_32
548.9
NK_33
547.3
NK_34
547.3
NK_35
545.9
NK_36
544.5
NK_37
544.3
NK_38
543.3
NK_39
542.5
NK_40
540.8
NK_41
532.6
NK_42
531.7
NK_43
525.0
NK_44
519.7
NK_45
519.6
NK_46
518.4
NK_47
518.4
NK_48
517.9
NK_49
514.7
NK_50
513.2
NK_51
512.4
NK_52
511.8
NK_53
508.3
NK_54
507.9
NK_55
506.2
NK_56
505.6
NK_57
505.5
NK_58
501.8
NK_59
497.5
NK_60
491.8
NK_61
491.8
NK_62
488.7
NK_63
487.5
NK_64
479.8
NK_65
478.0
NK_66
471.1
NK_67
469.9
NK_68
464.1
NK_69
463.2
NK_70
456.0
NK_71
454.1
NK_72
452.7
NK_73
447.9
NK_74
446.5
NK_75
442.4
NK_76
432.9
NK_77
429.5
NK_78
426.2
NK_79
422.8
NK_80
415.1
NK_81
410.8
NK_82
406.2
NK_83
405.8
NK_84
404.9
NK_85
403.8
NK_86
403.0
NK_87
396.0
NK_88
392.4
NK_89
380.2
NK_90
330.0
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