MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:176.5 nTPM
HPA Brain:81.4 nTPM
GTEx:176.5 nTPM
FANTOM5:217.1 Scaled Tags Per Million
Pig:151.7 nTPM
Mouse:172.2 nTPM
Allen mouse:5.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 81.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.3
1870 Female, age 42, unknown 74.3
2019 Male, age 18, unknown 62.8
1830 Male, age 51, unknown 61.1
1833 Male, age 53, unknown 61.1
2411 Female, age 72, unknown 60.6
1827 Male, age 72, unknown 58.1
2828 Female, age 72, unknown 56.7
2219 Male, age 76, both hemispheres 52.1
2666 Male, age 74, left hemisphere 51.6
2586 Male, age 75, left hemisphere 34.9
Dorsal raphe nucleus
nTPM: 66.9
2750 Male, age 76, both hemispheres 75.6
2298 Female, age 72, unknown 73.0
2047 Male, age 72, unknown 62.9
2016 Female, age 72, unknown 61.5
1828 Male, age 53, unknown 61.3
Inferior colliculus
nTPM: 59.8
1848 Female, age 42, unknown 63.5
1890 Male, age 53, unknown 61.7
2849 Male, age 72, unknown 57.7
2097 Female, age 72, unknown 56.5
Median raphe nucleus
nTPM: 81.4
2220 Male, age 76, midline 81.4
Periaquaductal grey, anterior
nTPM: 62.3
1795 Male, age 51, unknown 66.4
1947 Male, age 18, unknown 62.4
2502 Female, age 75, unknown 58.0
Periaquaductal grey, dorsal
nTPM: 59.8
2850 Male, age 76, both hemispheres 72.3
1831 Male, age 72, unknown 59.6
1840 Male, age 53, unknown 58.6
2464 Female, age 72, unknown 48.6
Periaquaductal grey, lateral
nTPM: 62.9
2272 Male, age 74, both hemispheres 79.1
2053 Male, age 18, unknown 55.9
2140 Male, age 76, both hemispheres 53.7
Pretectal area
nTPM: 67.1
1944 Female, age 72, unknown 75.7
2273 Male, age 74, both hemispheres 72.5
1817 Female, age 42, unknown 70.9
2667 Female, age 75, unknown 70.0
2316 Male, age 76, right hemisphere 67.9
1815 Male, age 53, unknown 66.8
2224 Female, age 72, unknown 66.2
1816 Male, age 51, unknown 64.9
2407 Male, age 75, both hemispheres 62.8
2007 Male, age 72, unknown 61.7
2825 Male, age 18, unknown 59.0
Red nucleus
nTPM: 62.1
2725 Female, age 75, unknown 78.9
1821 Female, age 72, unknown 71.1
2823 Male, age 76, right hemisphere 68.2
1865 Male, age 51, unknown 65.4
1904 Male, age 53, unknown 63.2
2227 Male, age 72, unknown 62.9
2503 Female, age 72, unknown 62.4
1954 Female, age 42, unknown 61.7
2769 Male, age 72, unknown 59.0
2785 Male, age 18, unknown 58.6
2584 Male, age 75, left hemisphere 50.1
2588 Male, age 74, left hemisphere 44.1
Substantia nigra
nTPM: 73.7
2241 Male, age 72, unknown 88.0
2665 Male, age 74, both hemispheres 80.5
2699 Male, age 18, unknown 77.0
1851 Male, age 51, unknown 75.5
1916 Female, age 42, unknown 75.4
1941 Male, age 53, unknown 72.2
2409 Female, age 72, unknown 71.7
1889 Female, age 72, unknown 71.0
2590 Female, age 75, unknown 69.4
2583 Male, age 75, right hemisphere 56.6
Superior colliculus
nTPM: 59.1
2587 Male, age 74, left hemisphere 72.6
2261 Male, age 18, unknown 66.0
1913 Female, age 42, unknown 64.4
1796 Male, age 53, unknown 63.9
1895 Male, age 76, right hemisphere 59.9
2087 Female, age 72, unknown 57.5
1995 Male, age 72, unknown 57.1
1839 Male, age 51, unknown 55.2
2668 Female, age 75, unknown 49.5
2664 Male, age 75, both hemispheres 45.0
Ventral tegmental area
nTPM: 70.4
2223 Female, age 72, unknown 79.0
2410 Female, age 72, unknown 78.4
2218 Male, age 76, both hemispheres 72.5
1915 Female, age 42, unknown 69.4
2021 Male, age 53, unknown 62.5
1942 Male, age 51, unknown 60.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 176.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 176.5
Samples: 183

Max nTPM: 313.4
Min nTPM: 111.5
Std nTPM: 37.1
Median nTPM: 170.8
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 313.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 292.3
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 290.6
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 280.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 273.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 272.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 265.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 260.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 257.1
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 255.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 241.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 217.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 217.1
FF:10158-103A5 76 years, female 217.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 151.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 142.9
Samples: 4

Max nTPM: 195.7
Min nTPM: 106.5
Sample A Female 195.7
Sample B Female 129.2
Sample C Male 140.3
Sample D Male 106.5
Midbrain
nTPM: 151.7
Samples: 4

Max nTPM: 183.6
Min nTPM: 124.5
Sample A Female 183.6
Sample B Female 141.1
Sample C Male 157.6
Sample D Male 124.5
Periaqueductal gray
nTPM: 124.4
Samples: 3

Max nTPM: 146.9
Min nTPM: 111.3
Sample B Female 111.3
Sample C Male 146.9
Sample D Male 114.9
Superior colliculi
nTPM: 146.2
Samples: 4

Max nTPM: 173.3
Min nTPM: 111.3
Sample A Female 170.6
Sample B Female 111.3
Sample C Male 173.3
Sample D Male 129.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 172.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 172.2
Samples: 4

Max nTPM: 176.2
Min nTPM: 167.1
Sample A Male 172.4
Sample B Male 167.1
Sample C Female 176.2
Sample D Female 173.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.8
68193057 Antisense, RP_040826_01_F03, Mouse strain C57BL/6J (56 days, male) 5.8

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