MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:110.6 nTPM
HPA Brain:126.1 nTPM
GTEx:110.6 nTPM
FANTOM5:349.0 Scaled Tags Per Million
Pig:59.3 nTPM
Mouse:114.3 nTPM
Allen mouse:2.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 126.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 90.8
2828 Female, age 72, unknown 153.7
2586 Male, age 75, left hemisphere 112.5
1827 Male, age 72, unknown 97.0
2219 Male, age 76, both hemispheres 93.7
1870 Female, age 42, unknown 89.6
1833 Male, age 53, unknown 81.3
2666 Male, age 74, left hemisphere 77.7
2411 Female, age 72, unknown 72.1
1830 Male, age 51, unknown 69.8
2019 Male, age 18, unknown 60.8
Dorsal raphe nucleus
nTPM: 126.1
2298 Female, age 72, unknown 149.1
2016 Female, age 72, unknown 131.3
2047 Male, age 72, unknown 128.5
1828 Male, age 53, unknown 114.7
2750 Male, age 76, both hemispheres 106.7
Inferior colliculus
nTPM: 95.8
1848 Female, age 42, unknown 106.9
2849 Male, age 72, unknown 98.8
2097 Female, age 72, unknown 91.8
1890 Male, age 53, unknown 85.8
Median raphe nucleus
nTPM: 120.5
2220 Male, age 76, midline 120.5
Periaquaductal grey, anterior
nTPM: 105.1
1795 Male, age 51, unknown 123.5
1947 Male, age 18, unknown 103.0
2502 Female, age 75, unknown 88.9
Periaquaductal grey, dorsal
nTPM: 110.8
2850 Male, age 76, both hemispheres 130.9
1840 Male, age 53, unknown 127.6
2464 Female, age 72, unknown 98.4
1831 Male, age 72, unknown 86.4
Periaquaductal grey, lateral
nTPM: 109.9
2140 Male, age 76, both hemispheres 116.0
2053 Male, age 18, unknown 115.0
2272 Male, age 74, both hemispheres 98.6
Pretectal area
nTPM: 99.1
2667 Female, age 75, unknown 129.2
2224 Female, age 72, unknown 117.3
1944 Female, age 72, unknown 110.1
2273 Male, age 74, both hemispheres 105.6
2825 Male, age 18, unknown 100.0
1817 Female, age 42, unknown 97.4
1816 Male, age 51, unknown 96.9
1815 Male, age 53, unknown 93.0
2316 Male, age 76, right hemisphere 87.9
2007 Male, age 72, unknown 83.9
2407 Male, age 75, both hemispheres 68.5
Red nucleus
nTPM: 89.8
2503 Female, age 72, unknown 117.6
2769 Male, age 72, unknown 105.9
2227 Male, age 72, unknown 101.4
1821 Female, age 72, unknown 97.0
2725 Female, age 75, unknown 96.6
2823 Male, age 76, right hemisphere 94.3
1954 Female, age 42, unknown 86.5
1904 Male, age 53, unknown 83.6
1865 Male, age 51, unknown 80.3
2584 Male, age 75, left hemisphere 75.1
2785 Male, age 18, unknown 71.8
2588 Male, age 74, left hemisphere 67.1
Substantia nigra
nTPM: 116.1
1916 Female, age 42, unknown 159.2
2699 Male, age 18, unknown 155.0
1851 Male, age 51, unknown 136.2
2409 Female, age 72, unknown 122.6
1941 Male, age 53, unknown 110.0
2241 Male, age 72, unknown 105.5
2590 Female, age 75, unknown 102.8
1889 Female, age 72, unknown 97.3
2665 Male, age 74, both hemispheres 89.3
2583 Male, age 75, right hemisphere 83.4
Superior colliculus
nTPM: 89.9
1796 Male, age 53, unknown 113.0
2087 Female, age 72, unknown 109.3
2261 Male, age 18, unknown 109.0
1913 Female, age 42, unknown 89.4
1995 Male, age 72, unknown 87.9
1839 Male, age 51, unknown 83.8
2587 Male, age 74, left hemisphere 80.1
2668 Female, age 75, unknown 79.8
2664 Male, age 75, both hemispheres 74.7
1895 Male, age 76, right hemisphere 71.8
Ventral tegmental area
nTPM: 113.3
1915 Female, age 42, unknown 124.2
1942 Male, age 51, unknown 118.0
2218 Male, age 76, both hemispheres 116.7
2021 Male, age 53, unknown 114.6
2410 Female, age 72, unknown 109.4
2223 Female, age 72, unknown 97.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 110.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 110.6
Samples: 183

Max nTPM: 251.6
Min nTPM: 19.1
Std nTPM: 42.3
Median nTPM: 107.5
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 251.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 236.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 236.2
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 203.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 201.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 199.8
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 199.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 199.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 198.2
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 197.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 195.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 349.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 349.0
FF:10158-103A5 76 years, female 349.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 59.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 54.8
Samples: 4

Max nTPM: 67.7
Min nTPM: 44.2
Sample A Female 67.7
Sample B Female 44.2
Sample C Male 49.5
Sample D Male 57.7
Midbrain
nTPM: 53.4
Samples: 4

Max nTPM: 107.8
Min nTPM: 30.8
Sample A Female 107.8
Sample B Female 39.1
Sample C Male 35.9
Sample D Male 30.8
Periaqueductal gray
nTPM: 27.9
Samples: 3

Max nTPM: 30.6
Min nTPM: 24.4
Sample B Female 30.6
Sample C Male 24.4
Sample D Male 28.7
Superior colliculi
nTPM: 59.3
Samples: 4

Max nTPM: 80.6
Min nTPM: 39.6
Sample A Female 74.1
Sample B Female 80.6
Sample C Male 43.0
Sample D Male 39.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 114.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 114.3
Samples: 4

Max nTPM: 127.8
Min nTPM: 105.5
Sample A Male 127.8
Sample B Male 105.5
Sample C Female 108.3
Sample D Female 115.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
81655578 Antisense, RP_090413_01_C03, Mouse strain C57BL/6J (56 days, male) 3.1
74819240 Antisense, RP_060315_02_C04, Mouse strain C57BL/6J (56 days, male) 1.2

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