A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4173.4
nTPM
Monaco:
998.6
nTPM
Schmiedel:
3245.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4173.4
HPA sample
nTPM
Memory B-cell nTPM: 4173.4
Samples: 6
Max nTPM: 4595.7
Min nTPM: 3557.0
P10809_1017
3557.0
P10809_1025
4595.7
P10809_1044
3782.5
P10809_1063
4060.4
P10809_1092
4457.6
P10809_1105
4587.3
Naive B-cell nTPM: 3580.2
Samples: 6
Max nTPM: 3885.3
Min nTPM: 3130.5
P10809_1011
3130.5
P10809_1029
3677.0
P10809_1048
3812.5
P10809_1067
3496.4
P10809_1091
3479.6
P10809_1104
3885.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
998.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 998.6
Samples: 4
Max nTPM: 1434.6
Min nTPM: 318.4
RHH5310_R3677
871.8
RHH5218_R3590
318.4
RHH5247_R3619
1434.6
RHH5276_R3648
1369.6
Naive B-cell nTPM: 966.1
Samples: 4
Max nTPM: 1698.6
Min nTPM: 311.7
RHH5308_R3675
1055.7
RHH5216_R3588
311.7
RHH5245_R3617
1698.6
RHH5274_R3646
798.5
Non-switched memory B-cell nTPM: 728.7
Samples: 4
Max nTPM: 1232.4
Min nTPM: 335.1
RHH5309_R3676
992.7
RHH5217_R3589
354.5
RHH5246_R3618
335.1
RHH5275_R3647
1232.4
Plasmablast nTPM: 562.9
Samples: 4
Max nTPM: 732.1
Min nTPM: 326.7
RHH5312_R3679
686.8
RHH5220_R3592
326.7
RHH5249_R3621
505.8
RHH5278_R3650
732.1
Switched memory B-cell nTPM: 734.3
Samples: 4
Max nTPM: 1071.0
Min nTPM: 468.6
RHH5311_R3678
821.0
RHH5219_R3591
576.4
RHH5248_R3620
468.6
RHH5277_R3649
1071.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3245.3
Schmiedel sample id
TPM
Naive B-cell TPM: 3245.3
Samples: 91
Max TPM: 4094.0
Min TPM: 1441.4
B_CELL_NAIVE_1
4094.0
B_CELL_NAIVE_2
3994.6
B_CELL_NAIVE_3
3955.4
B_CELL_NAIVE_4
3933.3
B_CELL_NAIVE_5
3882.5
B_CELL_NAIVE_6
3854.3
B_CELL_NAIVE_7
3839.6
B_CELL_NAIVE_8
3808.2
B_CELL_NAIVE_9
3801.2
B_CELL_NAIVE_10
3794.6
B_CELL_NAIVE_11
3786.0
B_CELL_NAIVE_12
3784.7
B_CELL_NAIVE_13
3772.1
B_CELL_NAIVE_14
3771.5
B_CELL_NAIVE_15
3763.7
B_CELL_NAIVE_16
3747.1
B_CELL_NAIVE_17
3709.1
B_CELL_NAIVE_18
3689.9
B_CELL_NAIVE_19
3662.4
B_CELL_NAIVE_20
3654.8
B_CELL_NAIVE_21
3602.8
B_CELL_NAIVE_22
3596.6
B_CELL_NAIVE_23
3590.0
B_CELL_NAIVE_24
3587.0
B_CELL_NAIVE_25
3573.4
B_CELL_NAIVE_26
3569.7
B_CELL_NAIVE_27
3538.5
B_CELL_NAIVE_28
3536.7
B_CELL_NAIVE_29
3526.0
B_CELL_NAIVE_30
3504.3
B_CELL_NAIVE_31
3493.7
B_CELL_NAIVE_32
3489.8
B_CELL_NAIVE_33
3479.7
B_CELL_NAIVE_34
3435.8
B_CELL_NAIVE_35
3429.2
B_CELL_NAIVE_36
3426.7
B_CELL_NAIVE_37
3422.2
B_CELL_NAIVE_38
3421.8
B_CELL_NAIVE_39
3417.2
B_CELL_NAIVE_40
3381.6
B_CELL_NAIVE_41
3360.0
B_CELL_NAIVE_42
3332.5
B_CELL_NAIVE_43
3309.2
B_CELL_NAIVE_44
3306.2
B_CELL_NAIVE_45
3303.6
B_CELL_NAIVE_46
3298.7
B_CELL_NAIVE_47
3278.6
B_CELL_NAIVE_48
3270.2
B_CELL_NAIVE_49
3256.1
B_CELL_NAIVE_50
3249.9
B_CELL_NAIVE_51
3227.5
B_CELL_NAIVE_52
3205.3
B_CELL_NAIVE_53
3187.4
B_CELL_NAIVE_54
3183.1
B_CELL_NAIVE_55
3179.9
B_CELL_NAIVE_56
3178.9
B_CELL_NAIVE_57
3167.9
B_CELL_NAIVE_58
3146.4
B_CELL_NAIVE_59
3142.2
B_CELL_NAIVE_60
3134.2
B_CELL_NAIVE_61
3127.6
B_CELL_NAIVE_62
3101.9
B_CELL_NAIVE_63
3065.7
B_CELL_NAIVE_64
3055.8
B_CELL_NAIVE_65
3028.0
B_CELL_NAIVE_66
3027.0
B_CELL_NAIVE_67
3024.5
B_CELL_NAIVE_68
3009.6
B_CELL_NAIVE_69
2969.9
B_CELL_NAIVE_70
2965.0
B_CELL_NAIVE_71
2953.0
B_CELL_NAIVE_72
2950.0
B_CELL_NAIVE_73
2949.3
B_CELL_NAIVE_74
2938.8
B_CELL_NAIVE_75
2856.1
B_CELL_NAIVE_76
2808.0
B_CELL_NAIVE_77
2788.8
B_CELL_NAIVE_78
2715.6
B_CELL_NAIVE_79
2705.0
B_CELL_NAIVE_80
2680.9
B_CELL_NAIVE_81
2623.7
B_CELL_NAIVE_82
2583.6
B_CELL_NAIVE_83
2553.4
B_CELL_NAIVE_84
2543.3
B_CELL_NAIVE_85
2517.3
B_CELL_NAIVE_86
2516.5
B_CELL_NAIVE_87
2481.5
B_CELL_NAIVE_88
2416.9
B_CELL_NAIVE_89
1994.2
B_CELL_NAIVE_90
1892.2
B_CELL_NAIVE_91
1441.4
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