A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1551.6
nTPM
Monaco:
558.2
nTPM
Schmiedel:
1610.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1551.6
HPA sample
nTPM
Classical monocyte nTPM: 1551.6
Samples: 6
Max nTPM: 2792.2
Min nTPM: 1113.4
P10809_1003
2792.2
P10809_1020
1210.2
P10809_1039
1213.2
P10809_1058
1309.9
P10809_1080
1113.4
P10809_1107
1670.6
Intermediate monocyte nTPM: 1430.9
Samples: 6
Max nTPM: 2279.8
Min nTPM: 850.5
P10809_1004
966.8
P10809_1023
1581.3
P10809_1042
1515.2
P10809_1061
850.5
P10809_1081
1392.0
P10809_1108
2279.8
Non-classical monocyte nTPM: 1177.3
Samples: 5
Max nTPM: 1627.0
Min nTPM: 759.9
P10809_1005
1173.9
P10809_1053
1062.5
P10809_1072
759.9
P10809_1082
1263.3
P10809_1109
1627.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
558.2
Monaco sample
nTPM
Classical monocyte nTPM: 295.1
Samples: 4
Max nTPM: 396.2
Min nTPM: 217.5
RHH5313_R3680
396.2
RHH5221_R3593
217.5
RHH5250_R3622
228.9
RHH5279_R3651
337.8
Intermediate monocyte nTPM: 558.2
Samples: 4
Max nTPM: 692.6
Min nTPM: 387.4
RHH5314_R3681
589.5
RHH5222_R3594
563.2
RHH5251_R3623
692.6
RHH5280_R3652
387.4
Non-classical monocyte nTPM: 396.7
Samples: 4
Max nTPM: 559.2
Min nTPM: 257.1
RHH5315_R3682
559.2
RHH5223_R3595
315.1
RHH5252_R3624
455.5
RHH5281_R3653
257.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1610.8
Schmiedel sample id
TPM
Classical monocyte TPM: 1610.8
Samples: 91
Max TPM: 2112.0
Min TPM: 1056.2
MONOCYTES_1
2112.0
MONOCYTES_2
2097.9
MONOCYTES_3
1968.2
MONOCYTES_4
1942.4
MONOCYTES_5
1907.3
MONOCYTES_6
1866.5
MONOCYTES_7
1863.4
MONOCYTES_8
1857.4
MONOCYTES_9
1854.8
MONOCYTES_10
1848.6
MONOCYTES_11
1828.7
MONOCYTES_12
1814.9
MONOCYTES_13
1814.2
MONOCYTES_14
1812.5
MONOCYTES_15
1808.2
MONOCYTES_16
1789.3
MONOCYTES_17
1787.1
MONOCYTES_18
1782.6
MONOCYTES_19
1763.5
MONOCYTES_20
1762.5
MONOCYTES_21
1761.8
MONOCYTES_22
1758.7
MONOCYTES_23
1756.8
MONOCYTES_24
1754.6
MONOCYTES_25
1744.3
MONOCYTES_26
1744.2
MONOCYTES_27
1734.6
MONOCYTES_28
1724.0
MONOCYTES_29
1722.4
MONOCYTES_30
1720.9
MONOCYTES_31
1720.7
MONOCYTES_32
1713.6
MONOCYTES_33
1704.5
MONOCYTES_34
1701.4
MONOCYTES_35
1698.7
MONOCYTES_36
1680.0
MONOCYTES_37
1675.4
MONOCYTES_38
1674.8
MONOCYTES_39
1671.1
MONOCYTES_40
1666.3
MONOCYTES_41
1661.8
MONOCYTES_42
1660.6
MONOCYTES_43
1652.7
MONOCYTES_44
1640.8
MONOCYTES_45
1637.2
MONOCYTES_46
1626.2
MONOCYTES_47
1623.5
MONOCYTES_48
1622.6
MONOCYTES_49
1621.5
MONOCYTES_50
1620.8
MONOCYTES_51
1619.2
MONOCYTES_52
1613.7
MONOCYTES_53
1599.3
MONOCYTES_54
1595.9
MONOCYTES_55
1582.9
MONOCYTES_56
1581.7
MONOCYTES_57
1563.6
MONOCYTES_58
1562.7
MONOCYTES_59
1559.3
MONOCYTES_60
1557.8
MONOCYTES_61
1545.1
MONOCYTES_62
1540.0
MONOCYTES_63
1531.9
MONOCYTES_64
1510.6
MONOCYTES_65
1503.2
MONOCYTES_66
1496.1
MONOCYTES_67
1473.9
MONOCYTES_68
1464.2
MONOCYTES_69
1451.3
MONOCYTES_70
1429.3
MONOCYTES_71
1428.4
MONOCYTES_72
1427.9
MONOCYTES_73
1425.7
MONOCYTES_74
1419.5
MONOCYTES_75
1407.7
MONOCYTES_76
1402.9
MONOCYTES_77
1379.8
MONOCYTES_78
1374.0
MONOCYTES_79
1370.8
MONOCYTES_80
1364.2
MONOCYTES_81
1352.4
MONOCYTES_82
1351.4
MONOCYTES_83
1339.0
MONOCYTES_84
1326.6
MONOCYTES_85
1319.2
MONOCYTES_86
1237.3
MONOCYTES_87
1235.6
MONOCYTES_88
1235.5
MONOCYTES_89
1187.1
MONOCYTES_90
1177.0
MONOCYTES_91
1056.2
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Non-classical monocyte TPM: 1510.5
Samples: 90
Max TPM: 2346.8
Min TPM: 871.3
M2_1
2346.8
M2_2
1976.1
M2_3
1902.6
M2_4
1877.8
M2_5
1875.1
M2_6
1857.8
M2_7
1854.7
M2_8
1841.9
M2_9
1814.0
M2_10
1811.8
M2_11
1810.1
M2_12
1780.1
M2_13
1779.8
M2_14
1766.7
M2_15
1762.8
M2_16
1745.7
M2_17
1730.7
M2_18
1727.9
M2_19
1716.0
M2_20
1715.8
M2_21
1715.6
M2_22
1698.2
M2_23
1668.9
M2_24
1656.9
M2_25
1641.1
M2_26
1639.3
M2_27
1633.7
M2_28
1621.9
M2_29
1621.4
M2_30
1620.4
M2_31
1616.9
M2_32
1615.9
M2_33
1614.4
M2_34
1594.1
M2_35
1592.1
M2_36
1591.3
M2_37
1582.0
M2_38
1578.5
M2_39
1568.4
M2_40
1566.1
M2_41
1563.0
M2_42
1557.7
M2_43
1552.1
M2_44
1541.1
M2_45
1522.8
M2_46
1516.2
M2_47
1512.5
M2_48
1507.6
M2_49
1500.8
M2_50
1494.2
M2_51
1492.7
M2_52
1480.6
M2_53
1468.6
M2_54
1465.3
M2_55
1462.7
M2_56
1460.7
M2_57
1448.2
M2_58
1426.0
M2_59
1390.6
M2_60
1380.3
M2_61
1370.8
M2_62
1362.2
M2_63
1356.1
M2_64
1352.3
M2_65
1346.0
M2_66
1341.2
M2_67
1340.3
M2_68
1339.4
M2_69
1329.7
M2_70
1325.8
M2_71
1307.6
M2_72
1298.8
M2_73
1278.7
M2_74
1266.4
M2_75
1257.7
M2_76
1249.4
M2_77
1248.8
M2_78
1237.3
M2_79
1221.2
M2_80
1212.7
M2_81
1188.5
M2_82
1181.7
M2_83
1177.6
M2_84
1155.6
M2_85
1153.8
M2_86
1107.1
M2_87
1101.1
M2_88
1062.6
M2_89
1025.4
M2_90
871.3
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