A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2036.4
nTPM
Monaco:
327.8
nTPM
Schmiedel:
1875.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2036.4
HPA sample
nTPM
NK-cell nTPM: 2036.4
Samples: 6
Max nTPM: 2371.9
Min nTPM: 899.6
P10809_1013
2371.9
P10809_1033
2310.9
P10809_1052
2023.3
P10809_1071
2320.9
P10809_1093
899.6
P10809_1103
2291.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
327.8
Monaco sample
nTPM
NK-cell nTPM: 327.8
Samples: 4
Max nTPM: 380.6
Min nTPM: 238.5
RHH5316_R3683
332.8
RHH5224_R3596
238.5
RHH5253_R3625
380.6
RHH5282_R3654
359.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1875.2
Schmiedel sample id
TPM
NK-cell TPM: 1875.2
Samples: 90
Max TPM: 3080.6
Min TPM: 1185.9
NK_1
3080.6
NK_2
2670.5
NK_3
2622.6
NK_4
2618.3
NK_5
2585.7
NK_6
2532.3
NK_7
2412.9
NK_8
2399.9
NK_9
2388.2
NK_10
2383.3
NK_11
2322.4
NK_12
2275.9
NK_13
2226.1
NK_14
2215.0
NK_15
2210.9
NK_16
2201.6
NK_17
2187.0
NK_18
2174.5
NK_19
2167.2
NK_20
2159.5
NK_21
2112.5
NK_22
2109.7
NK_23
2082.4
NK_24
2073.0
NK_25
2059.0
NK_26
2057.5
NK_27
2046.9
NK_28
2026.6
NK_29
1995.4
NK_30
1992.8
NK_31
1957.9
NK_32
1950.7
NK_33
1935.5
NK_34
1935.3
NK_35
1925.8
NK_36
1922.0
NK_37
1910.3
NK_38
1908.3
NK_39
1897.8
NK_40
1897.7
NK_41
1889.7
NK_42
1886.5
NK_43
1884.7
NK_44
1870.7
NK_45
1845.0
NK_46
1811.6
NK_47
1801.8
NK_48
1798.7
NK_49
1774.2
NK_50
1767.4
NK_51
1749.6
NK_52
1745.1
NK_53
1741.3
NK_54
1733.9
NK_55
1733.6
NK_56
1732.3
NK_57
1728.2
NK_58
1700.2
NK_59
1697.0
NK_60
1687.0
NK_61
1679.5
NK_62
1674.4
NK_63
1669.4
NK_64
1652.6
NK_65
1650.5
NK_66
1636.0
NK_67
1633.1
NK_68
1630.0
NK_69
1617.0
NK_70
1613.5
NK_71
1598.0
NK_72
1578.7
NK_73
1574.0
NK_74
1566.7
NK_75
1543.1
NK_76
1536.2
NK_77
1531.1
NK_78
1521.9
NK_79
1501.2
NK_80
1490.0
NK_81
1480.3
NK_82
1479.6
NK_83
1421.2
NK_84
1411.1
NK_85
1398.4
NK_86
1367.5
NK_87
1364.8
NK_88
1300.8
NK_89
1255.5
NK_90
1185.9
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