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RPS12
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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • RPS12
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:1173.9 nTPM
FANTOM5:311.2 Scaled Tags Per Million
Pig:258.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA006124
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1173.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1173.9
Samples: 300

Max nTPM: 5162.6
Min nTPM: 567.8
Std nTPM: 463.7
Median nTPM: 1077.6
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 5162.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 3199.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2974.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 2713.5
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 2579.5
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 2570.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 2467.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 2394.3
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 2390.2
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 2352.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 2187.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 2126.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 2104.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 2087.0
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 1893.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1889.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1866.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1849.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1841.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1751.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1727.9
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 1708.9
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 1684.1
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 1682.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1667.8
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 1646.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1645.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1627.9
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 1624.9
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 1623.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1614.8
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 1607.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1604.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 1598.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 1582.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1573.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1541.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1533.9
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 1524.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1506.4
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 1501.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1489.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1488.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1487.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1483.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1483.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1471.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1456.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 1451.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1447.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 1444.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1439.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1435.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 1432.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1431.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1425.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 1422.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 1418.1
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 1417.0
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 1409.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 1409.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 1407.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1401.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1394.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1388.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1380.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 1380.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1380.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 1378.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1377.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 1372.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1363.4
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 1363.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1361.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 1359.7
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 1351.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 1344.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1334.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1334.8
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 1334.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 1333.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1332.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1328.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1325.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 1325.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1312.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 1303.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1302.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1299.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1291.7
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 1291.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 1289.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1284.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1283.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1283.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1267.3
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 1262.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 1261.9
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 1261.3
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 1257.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1251.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1245.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 1238.8
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 1236.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1231.5
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 1217.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1214.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1213.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1213.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1210.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1210.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 1208.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 1197.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1193.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 1192.1
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 1190.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1189.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1178.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1175.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 1175.3
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 1174.7
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 1170.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 1163.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1162.9
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 1161.6
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 1158.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1157.7
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 1146.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 1143.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 1141.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1140.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 1133.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 1126.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 1123.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1118.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 1117.5
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 1115.1
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 1108.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 1107.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 1105.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 1099.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 1091.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 1088.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 1087.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 1086.0
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 1085.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 1081.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 1081.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 1080.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 1078.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 1076.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 1075.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 1072.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 1068.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 1068.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 1067.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 1066.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1060.0
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 1056.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 1051.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 1051.6
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 1050.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1048.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 1045.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 1042.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 1034.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 1034.3
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 1030.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 1027.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 1024.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 1018.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 1016.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 1013.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 1007.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 1006.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 1006.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 1005.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 1004.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 1003.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 1003.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 1002.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 997.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 996.6
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 992.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 984.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 984.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 983.8
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 982.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 982.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 981.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 978.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 972.6
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 971.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 965.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 965.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 962.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 961.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 953.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 950.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 950.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 949.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 949.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 948.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 946.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 937.0
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 935.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 935.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 932.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 930.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 915.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 913.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 911.9
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 911.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 909.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 907.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 899.2
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 898.3
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 897.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 896.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 895.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 895.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 894.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 885.1
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 884.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 884.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 883.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 882.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 881.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 878.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 876.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 875.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 875.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 874.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 869.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 866.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 862.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 857.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 850.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 846.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 845.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 845.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 838.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 836.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 836.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 835.1
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 835.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 834.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 830.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 826.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 823.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 823.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 820.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 814.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 810.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 809.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 807.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 803.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 795.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 794.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 784.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 783.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 782.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 774.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 773.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 767.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 765.0
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 762.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 760.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 759.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 758.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 753.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 743.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 738.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 736.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 735.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 730.0
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 729.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 727.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 720.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 720.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 720.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 715.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 707.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 703.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 700.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 695.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 693.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 688.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 684.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 668.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 664.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 658.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 655.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 652.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 642.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 641.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 638.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 619.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 572.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 567.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

311.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 311.2
FF:10164-103B2 76 years, female 311.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

258.3
Pig sample Sample description nTPM
Caudate
nTPM: 258.3
Samples: 4

Max nTPM: 274.7
Min nTPM: 236.6
Sample A Female 256.6
Sample B Female 265.2
Sample C Male 274.7
Sample D Male 236.6

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