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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:2984.1 nTPM
GTEx:2984.1 nTPM
FANTOM5:1732.4 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA006124
Squamous epithelial cells Medium



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2984.1
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 2984.1
Samples: 170

Max nTPM: 8520.1
Min nTPM: 1461.0
Std nTPM: 912.3
Median nTPM: 2849.1
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 8520.1
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 8475.6
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 6187.9
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 4651.8
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 4567.0
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 4476.6
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 4446.7
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 4390.4
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 4302.9
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 4289.7
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 4282.8
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 4036.1
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 4008.2
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 3958.7
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 3876.5
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 3874.9
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 3847.2
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 3830.8
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 3826.1
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 3788.2
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 3786.7
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 3770.5
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 3744.2
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 3730.9
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 3714.8
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 3696.8
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 3662.9
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 3650.3
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 3620.3
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 3594.2
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 3548.5
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 3531.8
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 3511.6
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 3492.9
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 3479.4
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 3401.5
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 3384.9
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 3366.0
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 3364.1
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 3363.0
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 3363.0
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 3359.7
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 3354.5
GTEX-16NPV-2526-SM-6M483 50-59 years, female 3342.2
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 3337.0
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 3306.6
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 3293.8
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 3291.4
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 3254.6
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 3251.6
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 3230.7
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 3214.7
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 3206.1
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 3180.2
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 3167.1
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 3159.6
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 3155.0
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 3153.2
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 3149.0
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 3133.1
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 3130.1
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 3111.5
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 3070.9
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 3050.8
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 3043.2
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 3038.9
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 3038.2
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 3021.8
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 3000.5
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 2988.6
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 2985.4
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 2936.1
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 2933.0
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 2932.8
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 2926.6
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 2915.5
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 2907.8
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 2907.5
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 2904.1
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 2898.1
GTEX-S341-1226-SM-4AD5S 40-49 years, female 2883.2
GTEX-14PKU-1326-SM-6871B 40-49 years, female 2881.8
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 2872.1
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 2853.1
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 2851.3
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 2846.8
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 2813.1
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 2804.7
GTEX-QCQG-1226-SM-48U23 50-59 years, female 2798.3
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 2796.9
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 2793.3
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 2783.9
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 2738.7
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 2735.2
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 2727.0
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 2720.9
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 2685.1
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 2683.3
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 2678.0
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 2670.7
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 2664.8
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 2664.7
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 2661.3
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 2654.3
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 2648.7
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 2629.6
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 2624.9
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 2613.6
GTEX-1C475-0526-SM-793AC 40-49 years, female 2612.8
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 2612.0
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 2588.3
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 2581.9
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 2566.0
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 2561.1
GTEX-11I78-2026-SM-5987C 50-59 years, female 2557.5
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 2544.0
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 2529.8
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 2511.0
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 2507.8
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 2505.0
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 2504.9
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 2503.5
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 2501.4
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 2497.4
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 2496.2
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 2452.2
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 2441.0
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 2430.9
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 2425.0
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 2423.3
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 2417.2
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 2417.0
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 2372.9
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 2357.9
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 2345.1
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 2335.6
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 2331.8
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 2331.6
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 2328.8
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 2321.7
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 2316.0
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 2269.8
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 2267.9
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 2265.2
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 2264.7
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 2250.6
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 2234.3
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 2218.5
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 2217.7
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 2199.7
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 2194.4
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 2159.9
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 2141.9
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 2135.5
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 2106.0
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 2090.9
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 2078.8
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 2059.5
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 2036.3
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1984.1
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1980.0
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1955.8
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1947.2
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1938.1
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1932.5
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1895.0
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 1856.5
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1856.1
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1590.8
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1461.0
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1732.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 1732.4
FF:10204-103F6 68 years, female 1732.4

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