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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:563.5 nTPM
GTEx:563.5 nTPM
FANTOM5:443.5 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

563.5
GTEx sample id Sample description nTPM
Retina
Average nTPM: 563.5
Samples: 105

Max nTPM: 766.5
Min nTPM: 365.0
Std nTPM: 86.3
Median nTPM:
35_1 74 years, female 766.5
17_1 71 years, male 765.9
321_1 62 years, female 762.0
246_1 77 years, male 730.9
153_1 70 years, female 723.3
379_1 60 years, male 715.8
526_1 61 years, male 713.2
377_1 82 years, female 708.9
376_1 75 years, female 707.5
386_1 76 years, male 704.3
389_1 86 years, female 699.8
384_1 83 years, male 691.8
4_1 88 years, female 690.4
320_1 89 years, female 689.7
120_1 70 years, female 678.6
452_1 88 years, female 677.7
322_1 76 years, male 667.9
189_1 76 years, male 662.0
319_1 81 years, male 658.2
2_1 77 years, female 652.9
394_1 75 years, female 651.5
355_1 70 years, female 643.1
126_1 63 years, male 630.8
518_1 75 years, female 628.7
351_1 91 years, male 626.8
137_1 83 years, male 623.9
6_1 73 years, female 614.9
396_1 62 years, male 604.4
139_1 64 years, female 603.8
404_1 82 years, female 602.6
495_1 57 years, female 601.8
375_1 74 years, female 600.5
315_1 62 years, female 595.6
503_1 68 years, male 587.7
353_1 82 years, female 583.1
265_1 87 years, male 580.2
251_1 78 years, male 577.5
354_1 81 years, female 576.3
145_1 84 years, male 574.5
491_1 89 years, female 570.3
348_1 84 years, male 563.8
352_1 62 years, male 562.9
109_1 81 years, female 561.1
254_1 77 years, female 559.7
142_1 61 years, female 557.7
18_1 88 years, male 557.5
447_1 81 years, male 557.4
243_1 75 years, male 557.2
308_1 70 years, female 554.1
115_1 83 years, male 553.2
295_1 61 years, female 550.9
466_1 57 years, female 550.0
307_1 66 years, female 549.1
349_1 83 years, male 544.6
517_1 88 years, male 543.6
468_1 89 years, male 543.0
229_1 69 years, female 541.3
163_1 78 years, male 540.9
218_1 71 years, female 537.4
501_1 88 years, male 536.8
316_1 62 years, male 533.6
217_1 76 years, male 532.5
406_1 79 years, male 532.5
506_1 65 years, male 532.4
311_1 78 years, male 532.1
405_1 91 years, male 529.3
173_1 67 years, male 528.6
335_1 73 years, female 527.3
99_1 64 years, male 527.0
172_1 72 years, female 527.0
499_1 55 years, female 526.6
177_1 74 years, male 525.6
480_1 63 years, male 523.6
162_1 79 years, female 522.1
237_1 82 years, male 518.5
318_1 68 years, male 513.6
264_1 73 years, female 512.8
291_1 76 years, male 512.7
42_1 85 years, male 510.6
293_1 68 years, female 498.9
286_1 68 years, female 497.2
288_1 66 years, female 491.8
119_1 70 years, female 490.9
414_1 84 years, female 490.3
356_1 87 years, female 489.0
350_1 84 years, female 488.9
425_1 59 years, female 487.3
314_1 67 years, male 487.0
32_1 67 years, male 478.4
415_1 77 years, female 478.1
317_1 60 years, male 474.7
266_1 85 years, male 473.5
117_1 61 years, male 471.6
324_1 76 years, male 469.9
81_1 67 years, male 469.4
292_1 71 years, male 456.1
413_1 59 years, female 455.1
347_1 72 years, male 453.6
313_1 79 years, female 453.2
89_1 63 years, male 451.4
9_1 66 years, female 441.7
490_1 67 years, female 417.7
149_1 88 years, male 414.8
41_1 94 years, female 388.6
43_1 64 years, female 365.0
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

443.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 443.5
FF:10030-101E3 24-65 years, mixed 443.5

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