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  • RPS12
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:2311.7 nTPM
HPA:1293.3 nTPM
GTEx:2311.7 nTPM
FANTOM5:585.2 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA006124
Glandular cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1293.3
overview
Male, age 65
Small intestine sample 232
nTPM: 1399
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1259.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 1276.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1238.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2311.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 2311.7
Samples: 207

Max nTPM: 5252.0
Min nTPM: 765.3
Std nTPM: 816.7
Median nTPM: 2171.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 5252.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 5165.5
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 4841.9
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 4776.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 4728.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 4560.1
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 4456.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 4443.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 4418.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 4350.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 4086.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 3578.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 3573.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 3426.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 3424.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 3401.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 3400.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 3383.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 3379.5
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 3346.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 3344.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 3325.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 3311.2
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 3300.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 3299.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 3281.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 3251.4
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 3245.0
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 3232.1
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 3174.5
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 3148.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 3121.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 3105.1
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 3100.6
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 3092.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 3081.1
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 3076.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 3048.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 2913.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 2894.5
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 2888.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 2805.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 2770.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 2765.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 2757.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 2749.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 2748.5
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 2743.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 2740.2
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 2737.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 2709.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 2700.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 2687.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 2660.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 2646.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 2645.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 2614.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 2606.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 2584.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 2579.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 2574.8
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 2563.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 2516.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 2510.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 2508.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 2495.8
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 2493.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 2467.2
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 2466.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 2461.4
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 2461.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 2454.9
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 2454.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 2451.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 2440.2
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 2424.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 2409.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 2407.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 2401.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 2400.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 2398.0
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 2370.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 2370.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 2370.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 2352.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 2317.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 2303.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 2290.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 2288.0
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 2288.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 2281.2
GTEX-13O61-1326-SM-5KM31 60-69 years, male 2280.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 2264.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 2250.1
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 2244.4
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 2241.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 2238.2
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 2236.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 2199.6
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 2197.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 2192.4
GTEX-1192X-2526-SM-59868 50-59 years, male 2192.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 2173.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 2171.6
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 2159.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 2157.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 2149.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 2136.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 2114.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 2092.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 2091.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 2053.6
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 2036.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 2029.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 2028.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 2014.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 2011.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1989.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1986.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1984.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1980.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1959.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1953.0
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 1951.4
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1946.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1942.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1937.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1924.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1923.2
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 1911.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1911.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1904.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1903.6
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 1900.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1893.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1877.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1874.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1874.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1872.1
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 1856.4
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 1852.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1838.6
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 1835.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1825.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1820.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1818.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1816.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1808.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1797.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1780.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1778.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1776.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1774.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1770.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1763.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1758.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1755.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1755.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1736.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1734.8
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1726.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1721.4
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1710.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1704.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1691.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1690.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1689.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1671.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1637.1
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1624.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1609.1
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 1602.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1602.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1598.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1596.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1565.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1554.4
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1544.9
GTEX-178AV-1226-SM-GOR11 40-49 years, male 1527.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1501.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1480.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1477.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1475.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1465.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1447.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1439.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1438.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1436.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1420.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1413.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1409.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1402.9
GTEX-14PN3-2026-SM-68729 60-69 years, female 1393.7
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1363.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1360.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1337.8
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 1316.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1316.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1246.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1246.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1201.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1185.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 1142.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 1129.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 1124.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1033.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 765.3
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

585.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 585.2
FF:10024-101D6 15,40,85 years, mixed 585.2

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