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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:267.1 nTPM
HPA Brain:1194.5 nTPM
GTEx:267.1 nTPM
FANTOM5:919.2 Scaled Tags Per Million
Pig:945.0 nTPM
Mouse:392.9 nTPM
Allen mouse:4.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1194.5
Sample id Sample description nTPM
Amygdala
nTPM: 1194.5
2695 Female, age 67, right hemisphere 1570.7
1987 Female, age 91, left hemisphere 1436.5
2814 Male, age 76, right hemisphere 1188.3
2514 Male, age 75, right hemisphere 1055.6
2517 Female, age 94, left hemisphere 721.3
Basal amygdala
nTPM: 692.2
2609 Male, age 75, right hemisphere 1014.5
2243 Female, age 91, right hemisphere 855.9
2110 Male, age 80, left hemisphere 758.4
2685 Female, age 94, left hemisphere 596.2
1955 Male, age 76, both hemispheres 556.6
2827 Female, age 67, right hemisphere 371.9
Central amygdala
nTPM: 841.9
2515 Male, age 75, right hemisphere 1342.3
2701 Female, age 91, right hemisphere 971.1
1905 Male, age 76, both hemispheres 735.7
2239 Male, age 80, left hemisphere 714.2
2826 Female, age 94, left hemisphere 446.1
Corticomedial amygdala
nTPM: 799.4
2242 Female, age 91, right hemisphere 1229.4
2829 Male, age 80, left hemisphere 989.2
2428 Male, age 75, right hemisphere 973.8
2429 Female, age 94, left hemisphere 627.3
2240 Male, age 76, both hemispheres 564.3
2535 Female, age 67, right hemisphere 412.0
Lateral amygdala
nTPM: 520.7
2255 Female, age 91, right hemisphere 713.6
2516 Male, age 75, right hemisphere 663.4
1883 Male, age 76, both hemispheres 520.8
2256 Male, age 80, left hemisphere 506.2
2830 Female, age 67, right hemisphere 435.5
2534 Female, age 94, left hemisphere 285.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

267.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 267.1
Samples: 181

Max nTPM: 953.8
Min nTPM: 45.3
Std nTPM: 165.1
Median nTPM: 212.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 953.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 899.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 894.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 833.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 826.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 732.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 717.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 609.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 592.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 564.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 550.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 543.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 538.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 521.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 515.8
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 507.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 489.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 479.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 472.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 467.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 460.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 450.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 441.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 440.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 440.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 430.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 419.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 414.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 413.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 400.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 392.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 390.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 386.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 383.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 378.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 377.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 372.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 366.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 364.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 359.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 351.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 338.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 334.6
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 331.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 325.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 311.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 309.0
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 306.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 305.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 302.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 299.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 295.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 294.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 291.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 291.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 284.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 283.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 282.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 279.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 278.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 276.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 273.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 270.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 269.9
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 264.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 261.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 258.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 255.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 255.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 253.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 251.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 246.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 245.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 245.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 242.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 241.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 241.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 232.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 229.3
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 226.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 225.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 225.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 223.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 221.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 220.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 219.0
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 216.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 216.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 216.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 212.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 212.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 212.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 211.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 211.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 209.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 209.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 207.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 207.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 204.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 204.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 202.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 200.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 200.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 199.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 196.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 195.6
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 194.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 193.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 191.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 191.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 189.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 189.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 189.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 189.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 189.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 188.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 188.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 188.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 187.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 186.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 185.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 181.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 175.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 173.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 173.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 172.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 171.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 169.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 169.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 169.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 168.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 167.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 166.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 164.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 164.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 163.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 163.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 156.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 153.3
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 152.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 152.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 150.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 149.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 149.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 146.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 145.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 142.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 142.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 139.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 136.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 135.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 133.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 133.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 132.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 129.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 128.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 126.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 125.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 125.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 124.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 122.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 119.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 119.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 118.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 116.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 115.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 114.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 113.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 113.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 110.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 108.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 108.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 108.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 100.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 98.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 96.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 90.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 88.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 83.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 65.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 45.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

919.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 919.2
FF:10151-102I7 76 years, female 919.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

945.0
Pig sample Sample description nTPM
Amygdala
nTPM: 945.0
Samples: 4

Max nTPM: 1129.5
Min nTPM: 863.7
Sample A Female 1129.5
Sample B Female 863.7
Sample C Male 868.7
Sample D Male 918.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

392.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 393.0
Samples: 4

Max nTPM: 422.8
Min nTPM: 326.9
Sample A Male 411.2
Sample B Male 326.9
Sample C Female 422.8
Sample D Female 410.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.7
73788443 Antisense, RP_051213_01_B02, Mouse strain C57BL/6J (56 days, male) 5.0
70429441 Antisense, RP_050614_01_F09, Mouse strain C57BL/6J (56 days, male) 4.7
73512200 Antisense, RP_050712_04_F12, Mouse strain C57BL/6J (56 days, male) 4.5
70918880 Antisense, RP_050712_04_F12, Mouse strain C57BL/6J (56 days, male) 1.2

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