HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni
Consensus:263.8 nTPM
HPA Brain:730.9 nTPM
GTEx:263.8 nTPM
FANTOM5:1101.6 Scaled Tags Per Million
Pig:1127.2 nTPM
Mouse:357.1 nTPM
Allen mouse:5.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA002989Antibody HPA003020Antibody CAB002306
Glial cells LowMediumMedium
Neuronal cells LowNot detectedHigh







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 730.9
Sample id Sample description nTPM
Hippocampus
nTPM: 730.9
2529 Female, age 94, left hemisphere 888.0
1855 Male, age 76, left hemisphere 862.1
1898 Male, age 80, left hemisphere 694.7
2148 Female, age 91, left hemisphere 691.3
1911 Female, age 85, right hemisphere 625.2
2621 Female, age 67, right hemisphere 624.4
Dentate gyrus
nTPM: 688.0
2528 Male, age 74, both hemispheres 1082.4
2530 Female, age 94, left hemisphere 796.2
2010 Male, age 76, both hemispheres 788.1
2246 Female, age 85, both hemispheres 590.9
2531 Female, age 67, both hemispheres 564.0
1927 Female, age 91, both hemispheres 306.5
Entorhinal gyrus
nTPM: 309.3
2117 Female, age 91, right hemisphere 508.8
1787 Male, age 76, left hemisphere 366.6
1938 Female, age 85, left hemisphere 277.9
2764 Male, age 80, right hemisphere 256.1
2613 Female, age 94, left hemisphere 234.5
2686 Male, age 75, right hemisphere 211.6
Hippocampus, CA1
nTPM: 649.9
2082 Female, age 91, right hemisphere 907.1
2045 Male, age 76, both hemispheres 767.3
1873 Female, age 85, both hemispheres 722.7
2527 Male, age 74, both hemispheres 676.7
2749 Male, age 80, left hemisphere 175.9
Hippocampus, CA2
nTPM: 569.7
2249 Male, age 74, both hemispheres 1183.1
2113 Female, age 91, right hemisphere 785.3
2437 Female, age 94, left hemisphere 448.8
1963 Male, age 80, left hemisphere 370.2
1940 Female, age 85, left hemisphere 353.2
1892 Male, age 76, both hemispheres 277.8
Hippocampus, CA3
nTPM: 589.5
2620 Female, age 94, left hemisphere 975.0
2436 Male, age 74, both hemispheres 782.8
2861 Female, age 67, both hemispheres 585.9
1891 Female, age 85, both hemispheres 531.2
1867 Male, age 76, both hemispheres 416.0
2137 Male, age 80, left hemisphere 245.8
Parahippocampal cortex
nTPM: 309.2
2018 Male, age 76, both hemispheres 632.7
2250 Female, age 67, right hemisphere 534.4
2245 Female, age 91, both hemispheres 373.2
1933 Female, age 85, both hemispheres 301.0
2692 Male, age 74, both hemispheres 265.5
1990 Female, age 91, right hemisphere 263.6
1850 Male, age 80, both hemispheres 232.3
2532 Female, age 72, left hemisphere 182.5
2693 Female, age 94, both hemispheres 172.0
2622 Female, age 67, right hemisphere 135.3
Perirhinal gyrus
nTPM: 271.7
1847 Female, age 91, left hemisphere 398.8
2521 Female, age 94, right hemisphere 373.4
1794 Male, age 80, right hemisphere 205.8
1841 Female, age 85, right hemisphere 205.6
2848 Male, age 76, right hemisphere 175.0
Subiculum
nTPM: 546.0
2729 Female, age 91, right hemisphere 982.6
2042 Male, age 76, both hemispheres 721.7
2619 Male, age 74, both hemispheres 564.3
1901 Male, age 80, both hemispheres 390.1
1977 Female, age 85, both hemispheres 346.3
2438 Female, age 94, left hemisphere 271.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 263.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 263.8
Samples: 255

Max nTPM: 1802.0
Min nTPM: 60.7
Std nTPM: 168.2
Median nTPM: 229.8
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 1802.0
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 1117.6
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 794.4
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 777.2
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 714.3
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 707.0
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 662.3
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 631.2
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 613.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 607.4
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 549.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1101.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 1101.6
FF:10153-102I9 76 years, female 1337.1
FF:10169-103B7 60 years, female 866.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 1127.2
Pig sample Sample description nTPM
Subiculum
nTPM: 982.5
Samples: 4

Max nTPM: 1464.1
Min nTPM: 794.1
Sample A Female 1464.1
Sample B Female 837.3
Sample C Male 834.3
Sample D Male 794.1
Dorsal hippocampus
nTPM: 1059.4
Samples: 4

Max nTPM: 1445.9
Min nTPM: 804.0
Sample A Female 1143.8
Sample B Female 843.9
Sample C Male 1445.9
Sample D Male 804.0
Entorhinal cortex
nTPM: 975.6
Samples: 4

Max nTPM: 1157.2
Min nTPM: 802.5
Sample A Female 1157.2
Sample B Female 802.5
Sample C Male 1099.4
Sample D Male 843.2
Ventral hippocampus
nTPM: 1127.2
Samples: 4

Max nTPM: 1455.2
Min nTPM: 960.2
Sample A Female 1033.7
Sample B Female 960.2
Sample C Male 1455.2
Sample D Male 1059.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 357.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 311.6
Samples: 4

Max nTPM: 428.4
Min nTPM: 224.1
Sample A Male 265.1
Sample B Male 224.1
Sample C Female 428.4
Sample D Female 328.6
Hippocampal formation
nTPM: 357.1
Samples: 4

Max nTPM: 408.4
Min nTPM: 302.5
Sample A Male 391.4
Sample B Male 302.5
Sample C Female 326.0
Sample D Female 408.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 5.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.6
73788443 Antisense, RP_051213_01_B02, Mouse strain C57BL/6J (56 days, male) 6.5
70429441 Antisense, RP_050614_01_F09, Mouse strain C57BL/6J (56 days, male) 5.5
73512200 Antisense, RP_050712_04_F12, Mouse strain C57BL/6J (56 days, male) 4.6
70918880 Antisense, RP_050712_04_F12, Mouse strain C57BL/6J (56 days, male) 1.8

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