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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:871.6 nTPM
HPA Brain:2093.8 nTPM
GTEx:871.6 nTPM
FANTOM5:3212.8 Scaled Tags Per Million
Pig:1750.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2093.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 2093.8
2048 Male, age 55, midline 2378.4
1981 Female, age 72, midline 2350.6
2816 Male, age 47, midline 2278.8
2565 Male, age 75, midline 1817.1
2194 Female, age 79, both hemispheres 1643.8
Cervical spinal cord, dorsal horn
nTPM: 1957.4
2296 Male, age 66, both hemispheres 2587.4
2173 Female, age 72, unknown 2301.8
2721 Male, age 90, both hemispheres 2160.6
1877 Male, age 55, unknown 1773.3
2069 Male, age 47, both hemispheres 1595.6
2297 Male, age 75, both hemispheres 1325.4
Cervical spinal cord, ventral horn
nTPM: 1786.9
2098 Female, age 72, unknown 2371.4
2809 Male, age 90, both hemispheres 2099.5
2068 Male, age 55, unknown 1739.4
2295 Male, age 66, both hemispheres 1535.8
2480 Male, age 75, both hemispheres 1497.6
2820 Female, age 79, both hemispheres 1477.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

871.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 871.6
Samples: 204

Max nTPM: 1870.8
Min nTPM: 288.3
Std nTPM: 309.9
Median nTPM: 848.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1870.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1824.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1806.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1767.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1750.5
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 1708.4
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 1546.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 1533.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 1502.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1460.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1453.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1438.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1382.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1342.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1323.5
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 1314.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1279.6
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 1277.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1259.0
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 1253.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1244.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1241.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 1222.0
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 1220.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1218.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1217.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 1209.3
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 1196.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1185.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1172.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1162.1
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 1160.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1156.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1144.6
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 1142.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1128.8
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 1124.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1123.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1117.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1114.3
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 1110.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1101.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1098.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 1097.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1093.8
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 1091.6
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 1088.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1088.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1085.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 1080.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 1076.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1071.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1058.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1054.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1044.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1037.5
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 1035.8
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 1030.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1018.0
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 997.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 994.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 985.7
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 971.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 969.8
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 964.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 958.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 944.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 943.8
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 942.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 937.3
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 935.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 933.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 932.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 928.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 927.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 927.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 925.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 920.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 914.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 912.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 911.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 902.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 900.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 898.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 898.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 897.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 896.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 895.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 892.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 887.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 886.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 885.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 883.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 881.4
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 880.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 878.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 870.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 865.6
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 863.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 861.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 851.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 851.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 844.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 840.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 839.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 839.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 831.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 829.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 823.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 822.7
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 819.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 811.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 808.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 800.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 794.0
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 788.5
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 788.5
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 786.9
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 785.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 784.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 781.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 778.3
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 771.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 766.9
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 765.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 757.7
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 753.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 741.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 738.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 738.1
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 734.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 731.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 727.7
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 719.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 717.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 715.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 707.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 700.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 698.7
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 695.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 693.8
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 693.8
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 690.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 688.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 686.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 685.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 684.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 680.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 676.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 674.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 669.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 669.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 668.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 642.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 641.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 640.6
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 639.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 637.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 636.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 634.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 632.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 629.5
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 628.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 622.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 615.5
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 611.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 610.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 607.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 605.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 591.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 591.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 579.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 578.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 569.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 559.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 556.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 555.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 545.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 535.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 534.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 532.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 529.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 515.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 495.8
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 486.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 483.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 473.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 458.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 435.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 426.1
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 423.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 421.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 414.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 414.0
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 406.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 399.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 387.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 371.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 369.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 357.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 342.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 324.5
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 303.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 288.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

3212.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 3212.8
FF:10159-103A6 76 years, female 4117.6
FF:10181-103D1 60 years, female 2308.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1750.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 1750.8
Samples: 4

Max nTPM: 2546.0
Min nTPM: 987.8
Sample A Female 987.8
Sample B Female 1804.4
Sample C Male 2546.0
Sample D Male 1664.8
Ventral spinal cord
nTPM: 1442.8
Samples: 4

Max nTPM: 1715.3
Min nTPM: 1211.2
Sample A Female 1211.2
Sample B Female 1360.4
Sample C Male 1715.3
Sample D Male 1484.3

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