A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.6
nTPM
Monaco:
127.1
nTPM
Schmiedel:
69.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.6
HPA sample
nTPM
Memory B-cell nTPM: 15.6
Samples: 6
Max nTPM: 22.3
Min nTPM: 7.1
P10809_1017
18.9
P10809_1025
22.3
P10809_1044
7.1
P10809_1063
12.9
P10809_1092
13.4
P10809_1105
19.0
Naive B-cell nTPM: 9.6
Samples: 6
Max nTPM: 14.1
Min nTPM: 7.3
P10809_1011
7.3
P10809_1029
11.4
P10809_1048
14.1
P10809_1067
8.4
P10809_1091
8.9
P10809_1104
7.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
127.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 39.0
Samples: 4
Max nTPM: 53.6
Min nTPM: 9.1
RHH5310_R3677
49.3
RHH5218_R3590
44.0
RHH5247_R3619
9.1
RHH5276_R3648
53.6
Naive B-cell nTPM: 20.3
Samples: 4
Max nTPM: 25.5
Min nTPM: 13.9
RHH5308_R3675
25.5
RHH5216_R3588
17.0
RHH5245_R3617
13.9
RHH5274_R3646
24.9
Non-switched memory B-cell nTPM: 38.5
Samples: 4
Max nTPM: 45.3
Min nTPM: 28.9
RHH5309_R3676
36.9
RHH5217_R3589
28.9
RHH5246_R3618
45.3
RHH5275_R3647
42.9
Plasmablast nTPM: 127.1
Samples: 4
Max nTPM: 137.9
Min nTPM: 107.5
RHH5312_R3679
137.9
RHH5220_R3592
107.5
RHH5249_R3621
135.7
RHH5278_R3650
127.4
Switched memory B-cell nTPM: 40.1
Samples: 4
Max nTPM: 67.7
Min nTPM: 26.3
RHH5311_R3678
67.7
RHH5219_R3591
26.3
RHH5248_R3620
26.5
RHH5277_R3649
39.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
69.1
Schmiedel sample id
TPM
Naive B-cell TPM: 69.1
Samples: 91
Max TPM: 111.4
Min TPM: 43.2
B_CELL_NAIVE_1
111.4
B_CELL_NAIVE_2
104.0
B_CELL_NAIVE_3
96.1
B_CELL_NAIVE_4
91.8
B_CELL_NAIVE_5
90.9
B_CELL_NAIVE_6
89.6
B_CELL_NAIVE_7
89.5
B_CELL_NAIVE_8
87.5
B_CELL_NAIVE_9
84.4
B_CELL_NAIVE_10
84.1
B_CELL_NAIVE_11
83.3
B_CELL_NAIVE_12
81.7
B_CELL_NAIVE_13
81.1
B_CELL_NAIVE_14
80.2
B_CELL_NAIVE_15
79.8
B_CELL_NAIVE_16
79.6
B_CELL_NAIVE_17
79.2
B_CELL_NAIVE_18
77.6
B_CELL_NAIVE_19
77.4
B_CELL_NAIVE_20
77.0
B_CELL_NAIVE_21
76.7
B_CELL_NAIVE_22
75.6
B_CELL_NAIVE_23
75.1
B_CELL_NAIVE_24
74.7
B_CELL_NAIVE_25
74.5
B_CELL_NAIVE_26
73.7
B_CELL_NAIVE_27
73.4
B_CELL_NAIVE_28
73.3
B_CELL_NAIVE_29
72.6
B_CELL_NAIVE_30
71.9
B_CELL_NAIVE_31
71.3
B_CELL_NAIVE_32
71.1
B_CELL_NAIVE_33
71.1
B_CELL_NAIVE_34
71.1
B_CELL_NAIVE_35
71.1
B_CELL_NAIVE_36
70.6
B_CELL_NAIVE_37
70.2
B_CELL_NAIVE_38
69.3
B_CELL_NAIVE_39
69.1
B_CELL_NAIVE_40
69.1
B_CELL_NAIVE_41
68.9
B_CELL_NAIVE_42
68.6
B_CELL_NAIVE_43
68.0
B_CELL_NAIVE_44
68.0
B_CELL_NAIVE_45
67.3
B_CELL_NAIVE_46
66.8
B_CELL_NAIVE_47
66.8
B_CELL_NAIVE_48
66.7
B_CELL_NAIVE_49
66.5
B_CELL_NAIVE_50
66.2
B_CELL_NAIVE_51
66.1
B_CELL_NAIVE_52
65.6
B_CELL_NAIVE_53
65.2
B_CELL_NAIVE_54
65.2
B_CELL_NAIVE_55
65.0
B_CELL_NAIVE_56
65.0
B_CELL_NAIVE_57
64.8
B_CELL_NAIVE_58
64.6
B_CELL_NAIVE_59
64.5
B_CELL_NAIVE_60
63.8
B_CELL_NAIVE_61
63.2
B_CELL_NAIVE_62
63.2
B_CELL_NAIVE_63
62.9
B_CELL_NAIVE_64
62.5
B_CELL_NAIVE_65
62.2
B_CELL_NAIVE_66
61.8
B_CELL_NAIVE_67
61.5
B_CELL_NAIVE_68
61.4
B_CELL_NAIVE_69
60.7
B_CELL_NAIVE_70
60.6
B_CELL_NAIVE_71
60.5
B_CELL_NAIVE_72
60.4
B_CELL_NAIVE_73
59.9
B_CELL_NAIVE_74
59.4
B_CELL_NAIVE_75
59.4
B_CELL_NAIVE_76
59.2
B_CELL_NAIVE_77
58.6
B_CELL_NAIVE_78
58.0
B_CELL_NAIVE_79
57.8
B_CELL_NAIVE_80
57.8
B_CELL_NAIVE_81
57.6
B_CELL_NAIVE_82
57.5
B_CELL_NAIVE_83
57.4
B_CELL_NAIVE_84
57.2
B_CELL_NAIVE_85
55.2
B_CELL_NAIVE_86
54.9
B_CELL_NAIVE_87
53.6
B_CELL_NAIVE_88
51.5
B_CELL_NAIVE_89
49.8
B_CELL_NAIVE_90
43.7
B_CELL_NAIVE_91
43.2
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