A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
27.3
nTPM
Monaco:
74.9
nTPM
Schmiedel:
66.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.3
HPA sample
nTPM
Classical monocyte nTPM: 21.6
Samples: 6
Max nTPM: 28.0
Min nTPM: 17.2
P10809_1003
21.6
P10809_1020
27.9
P10809_1039
28.0
P10809_1058
17.4
P10809_1080
17.4
P10809_1107
17.2
Intermediate monocyte nTPM: 27.3
Samples: 6
Max nTPM: 43.2
Min nTPM: 18.9
P10809_1004
26.7
P10809_1023
43.2
P10809_1042
31.5
P10809_1061
24.1
P10809_1081
19.4
P10809_1108
18.9
Non-classical monocyte nTPM: 26.8
Samples: 5
Max nTPM: 37.0
Min nTPM: 18.3
P10809_1005
26.3
P10809_1053
29.3
P10809_1072
37.0
P10809_1082
18.3
P10809_1109
23.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
74.9
Monaco sample
nTPM
Classical monocyte nTPM: 66.3
Samples: 4
Max nTPM: 73.0
Min nTPM: 53.4
RHH5313_R3680
68.4
RHH5221_R3593
70.2
RHH5250_R3622
53.4
RHH5279_R3651
73.0
Intermediate monocyte nTPM: 62.1
Samples: 4
Max nTPM: 76.0
Min nTPM: 31.5
RHH5314_R3681
66.9
RHH5222_R3594
76.0
RHH5251_R3623
31.5
RHH5280_R3652
73.9
Non-classical monocyte nTPM: 74.9
Samples: 4
Max nTPM: 87.9
Min nTPM: 61.8
RHH5315_R3682
75.6
RHH5223_R3595
87.9
RHH5252_R3624
61.8
RHH5281_R3653
74.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
66.6
Schmiedel sample id
TPM
Classical monocyte TPM: 51.2
Samples: 91
Max TPM: 67.7
Min TPM: 39.9
MONOCYTES_1
67.7
MONOCYTES_2
64.0
MONOCYTES_3
62.6
MONOCYTES_4
62.2
MONOCYTES_5
62.0
MONOCYTES_6
61.6
MONOCYTES_7
60.7
MONOCYTES_8
60.6
MONOCYTES_9
60.2
MONOCYTES_10
59.2
MONOCYTES_11
58.7
MONOCYTES_12
58.4
MONOCYTES_13
58.1
MONOCYTES_14
57.8
MONOCYTES_15
57.4
MONOCYTES_16
57.2
MONOCYTES_17
57.0
MONOCYTES_18
56.5
MONOCYTES_19
55.8
MONOCYTES_20
55.7
MONOCYTES_21
54.9
MONOCYTES_22
54.3
MONOCYTES_23
54.2
MONOCYTES_24
54.2
MONOCYTES_25
53.9
MONOCYTES_26
53.9
MONOCYTES_27
53.8
MONOCYTES_28
53.1
MONOCYTES_29
52.9
MONOCYTES_30
52.8
MONOCYTES_31
52.8
MONOCYTES_32
52.7
MONOCYTES_33
52.7
MONOCYTES_34
52.2
MONOCYTES_35
52.0
MONOCYTES_36
51.8
MONOCYTES_37
51.7
MONOCYTES_38
51.7
MONOCYTES_39
51.7
MONOCYTES_40
51.6
MONOCYTES_41
51.6
MONOCYTES_42
51.4
MONOCYTES_43
51.3
MONOCYTES_44
51.2
MONOCYTES_45
50.9
MONOCYTES_46
50.8
MONOCYTES_47
50.5
MONOCYTES_48
50.5
MONOCYTES_49
50.5
MONOCYTES_50
50.5
MONOCYTES_51
50.1
MONOCYTES_52
49.7
MONOCYTES_53
49.5
MONOCYTES_54
49.1
MONOCYTES_55
49.0
MONOCYTES_56
48.8
MONOCYTES_57
48.7
MONOCYTES_58
48.7
MONOCYTES_59
48.7
MONOCYTES_60
48.7
MONOCYTES_61
48.6
MONOCYTES_62
48.4
MONOCYTES_63
48.4
MONOCYTES_64
48.2
MONOCYTES_65
48.1
MONOCYTES_66
47.9
MONOCYTES_67
47.8
MONOCYTES_68
47.1
MONOCYTES_69
46.7
MONOCYTES_70
46.7
MONOCYTES_71
46.5
MONOCYTES_72
46.4
MONOCYTES_73
46.4
MONOCYTES_74
46.3
MONOCYTES_75
46.2
MONOCYTES_76
46.1
MONOCYTES_77
45.9
MONOCYTES_78
45.4
MONOCYTES_79
45.3
MONOCYTES_80
45.2
MONOCYTES_81
45.2
MONOCYTES_82
44.9
MONOCYTES_83
44.7
MONOCYTES_84
44.1
MONOCYTES_85
43.6
MONOCYTES_86
42.9
MONOCYTES_87
42.5
MONOCYTES_88
42.2
MONOCYTES_89
41.8
MONOCYTES_90
41.5
MONOCYTES_91
39.9
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Non-classical monocyte TPM: 66.6
Samples: 90
Max TPM: 99.9
Min TPM: 48.3
M2_1
99.9
M2_2
96.9
M2_3
89.6
M2_4
87.7
M2_5
86.8
M2_6
86.5
M2_7
85.4
M2_8
83.9
M2_9
83.0
M2_10
82.8
M2_11
81.5
M2_12
80.3
M2_13
78.7
M2_14
78.5
M2_15
76.7
M2_16
76.1
M2_17
76.1
M2_18
75.8
M2_19
75.3
M2_20
75.2
M2_21
74.5
M2_22
74.1
M2_23
73.5
M2_24
73.1
M2_25
73.0
M2_26
72.8
M2_27
72.5
M2_28
72.2
M2_29
72.1
M2_30
70.4
M2_31
68.8
M2_32
68.2
M2_33
68.2
M2_34
67.7
M2_35
67.3
M2_36
66.8
M2_37
66.7
M2_38
66.4
M2_39
66.1
M2_40
66.0
M2_41
65.8
M2_42
65.8
M2_43
65.8
M2_44
65.2
M2_45
63.7
M2_46
63.7
M2_47
63.6
M2_48
63.5
M2_49
63.3
M2_50
62.8
M2_51
62.8
M2_52
62.7
M2_53
62.5
M2_54
62.4
M2_55
62.4
M2_56
62.4
M2_57
62.1
M2_58
61.4
M2_59
61.2
M2_60
61.1
M2_61
61.0
M2_62
61.0
M2_63
60.3
M2_64
60.1
M2_65
59.0
M2_66
58.2
M2_67
58.2
M2_68
57.7
M2_69
57.5
M2_70
57.4
M2_71
57.2
M2_72
56.9
M2_73
56.7
M2_74
56.6
M2_75
56.5
M2_76
56.5
M2_77
56.5
M2_78
55.8
M2_79
55.0
M2_80
55.0
M2_81
55.0
M2_82
54.7
M2_83
53.1
M2_84
52.8
M2_85
52.4
M2_86
52.0
M2_87
51.7
M2_88
51.6
M2_89
49.4
M2_90
48.3
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