A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
26.6
nTPM
Monaco:
37.7
nTPM
Schmiedel:
56.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.6
HPA sample
nTPM
NK-cell nTPM: 26.6
Samples: 6
Max nTPM: 37.2
Min nTPM: 18.7
P10809_1013
18.7
P10809_1033
28.5
P10809_1052
20.8
P10809_1071
31.4
P10809_1093
37.2
P10809_1103
22.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.7
Monaco sample
nTPM
NK-cell nTPM: 37.7
Samples: 4
Max nTPM: 49.9
Min nTPM: 27.8
RHH5316_R3683
49.9
RHH5224_R3596
31.5
RHH5253_R3625
27.8
RHH5282_R3654
41.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
56.4
Schmiedel sample id
TPM
NK-cell TPM: 56.4
Samples: 90
Max TPM: 93.1
Min TPM: 30.7
NK_1
93.1
NK_2
89.2
NK_3
88.2
NK_4
88.0
NK_5
87.5
NK_6
80.5
NK_7
78.8
NK_8
75.0
NK_9
73.6
NK_10
72.5
NK_11
70.7
NK_12
70.4
NK_13
69.9
NK_14
69.2
NK_15
68.8
NK_16
68.7
NK_17
67.7
NK_18
67.4
NK_19
66.7
NK_20
65.8
NK_21
65.3
NK_22
64.5
NK_23
63.8
NK_24
63.4
NK_25
62.4
NK_26
62.4
NK_27
62.1
NK_28
62.1
NK_29
61.8
NK_30
61.4
NK_31
61.2
NK_32
61.1
NK_33
60.8
NK_34
59.8
NK_35
59.5
NK_36
58.6
NK_37
58.5
NK_38
58.2
NK_39
57.3
NK_40
56.8
NK_41
56.2
NK_42
56.2
NK_43
55.9
NK_44
55.8
NK_45
55.7
NK_46
55.6
NK_47
55.6
NK_48
55.3
NK_49
54.8
NK_50
53.8
NK_51
53.6
NK_52
52.9
NK_53
52.6
NK_54
52.6
NK_55
52.5
NK_56
52.0
NK_57
51.0
NK_58
50.5
NK_59
50.4
NK_60
50.4
NK_61
50.1
NK_62
50.0
NK_63
49.6
NK_64
49.4
NK_65
48.0
NK_66
47.9
NK_67
47.3
NK_68
47.1
NK_69
46.8
NK_70
46.2
NK_71
46.0
NK_72
45.6
NK_73
44.2
NK_74
43.7
NK_75
43.7
NK_76
41.3
NK_77
40.9
NK_78
40.5
NK_79
40.4
NK_80
39.4
NK_81
39.1
NK_82
39.0
NK_83
38.8
NK_84
38.3
NK_85
37.5
NK_86
36.6
NK_87
36.2
NK_88
36.2
NK_89
31.3
NK_90
30.7
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