A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2234.9
nTPM
Monaco:
324.2
nTPM
Schmiedel:
429.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2234.9
HPA sample
nTPM
Memory B-cell nTPM: 2234.9
Samples: 6
Max nTPM: 2774.3
Min nTPM: 1835.4
P10809_1017
1835.4
P10809_1025
2349.4
P10809_1044
1876.3
P10809_1063
2222.0
P10809_1092
2352.2
P10809_1105
2774.3
Naive B-cell nTPM: 2173.6
Samples: 6
Max nTPM: 2755.0
Min nTPM: 1684.8
P10809_1011
1684.8
P10809_1029
2167.9
P10809_1048
2119.8
P10809_1067
2245.4
P10809_1091
2068.7
P10809_1104
2755.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
324.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 324.2
Samples: 4
Max nTPM: 573.5
Min nTPM: 90.3
RHH5310_R3677
261.3
RHH5218_R3590
90.3
RHH5247_R3619
573.5
RHH5276_R3648
371.6
Naive B-cell nTPM: 262.4
Samples: 4
Max nTPM: 498.4
Min nTPM: 113.8
RHH5308_R3675
237.0
RHH5216_R3588
113.8
RHH5245_R3617
498.4
RHH5274_R3646
200.2
Non-switched memory B-cell nTPM: 197.4
Samples: 4
Max nTPM: 326.5
Min nTPM: 104.0
RHH5309_R3676
254.1
RHH5217_R3589
105.1
RHH5246_R3618
104.0
RHH5275_R3647
326.5
Plasmablast nTPM: 293.3
Samples: 4
Max nTPM: 363.4
Min nTPM: 196.2
RHH5312_R3679
363.4
RHH5220_R3592
196.2
RHH5249_R3621
303.1
RHH5278_R3650
310.3
Switched memory B-cell nTPM: 195.0
Samples: 4
Max nTPM: 280.4
Min nTPM: 120.5
RHH5311_R3678
229.6
RHH5219_R3591
149.4
RHH5248_R3620
120.5
RHH5277_R3649
280.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
429.1
Schmiedel sample id
TPM
Naive B-cell TPM: 429.1
Samples: 91
Max TPM: 519.5
Min TPM: 259.9
B_CELL_NAIVE_1
519.5
B_CELL_NAIVE_2
501.4
B_CELL_NAIVE_3
501.4
B_CELL_NAIVE_4
497.9
B_CELL_NAIVE_5
497.8
B_CELL_NAIVE_6
494.6
B_CELL_NAIVE_7
489.9
B_CELL_NAIVE_8
488.4
B_CELL_NAIVE_9
481.7
B_CELL_NAIVE_10
480.5
B_CELL_NAIVE_11
469.7
B_CELL_NAIVE_12
468.8
B_CELL_NAIVE_13
468.7
B_CELL_NAIVE_14
467.1
B_CELL_NAIVE_15
466.7
B_CELL_NAIVE_16
466.1
B_CELL_NAIVE_17
463.3
B_CELL_NAIVE_18
462.6
B_CELL_NAIVE_19
462.5
B_CELL_NAIVE_20
460.5
B_CELL_NAIVE_21
456.9
B_CELL_NAIVE_22
454.8
B_CELL_NAIVE_23
451.2
B_CELL_NAIVE_24
449.7
B_CELL_NAIVE_25
449.0
B_CELL_NAIVE_26
448.3
B_CELL_NAIVE_27
447.5
B_CELL_NAIVE_28
446.9
B_CELL_NAIVE_29
445.8
B_CELL_NAIVE_30
443.8
B_CELL_NAIVE_31
443.7
B_CELL_NAIVE_32
443.5
B_CELL_NAIVE_33
443.3
B_CELL_NAIVE_34
442.2
B_CELL_NAIVE_35
439.8
B_CELL_NAIVE_36
439.7
B_CELL_NAIVE_37
438.7
B_CELL_NAIVE_38
438.1
B_CELL_NAIVE_39
434.0
B_CELL_NAIVE_40
432.6
B_CELL_NAIVE_41
431.8
B_CELL_NAIVE_42
431.0
B_CELL_NAIVE_43
429.1
B_CELL_NAIVE_44
428.5
B_CELL_NAIVE_45
428.5
B_CELL_NAIVE_46
428.1
B_CELL_NAIVE_47
427.8
B_CELL_NAIVE_48
425.9
B_CELL_NAIVE_49
425.6
B_CELL_NAIVE_50
424.3
B_CELL_NAIVE_51
424.1
B_CELL_NAIVE_52
423.4
B_CELL_NAIVE_53
423.2
B_CELL_NAIVE_54
422.9
B_CELL_NAIVE_55
421.9
B_CELL_NAIVE_56
420.0
B_CELL_NAIVE_57
419.9
B_CELL_NAIVE_58
419.8
B_CELL_NAIVE_59
419.6
B_CELL_NAIVE_60
418.5
B_CELL_NAIVE_61
416.3
B_CELL_NAIVE_62
415.6
B_CELL_NAIVE_63
415.0
B_CELL_NAIVE_64
413.7
B_CELL_NAIVE_65
412.8
B_CELL_NAIVE_66
411.8
B_CELL_NAIVE_67
411.7
B_CELL_NAIVE_68
409.7
B_CELL_NAIVE_69
407.8
B_CELL_NAIVE_70
407.1
B_CELL_NAIVE_71
406.6
B_CELL_NAIVE_72
404.5
B_CELL_NAIVE_73
403.3
B_CELL_NAIVE_74
402.5
B_CELL_NAIVE_75
400.4
B_CELL_NAIVE_76
399.6
B_CELL_NAIVE_77
397.1
B_CELL_NAIVE_78
394.0
B_CELL_NAIVE_79
392.2
B_CELL_NAIVE_80
389.6
B_CELL_NAIVE_81
387.7
B_CELL_NAIVE_82
387.4
B_CELL_NAIVE_83
386.3
B_CELL_NAIVE_84
385.8
B_CELL_NAIVE_85
380.4
B_CELL_NAIVE_86
367.8
B_CELL_NAIVE_87
365.7
B_CELL_NAIVE_88
353.2
B_CELL_NAIVE_89
342.9
B_CELL_NAIVE_90
330.2
B_CELL_NAIVE_91
259.9
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