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BETA
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  • RPL24
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:2234.9 nTPM
Monaco:324.2 nTPM
Schmiedel:429.1 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

2234.9
HPA sample nTPM
Memory B-cell
nTPM: 2234.9
Samples: 6

Max nTPM: 2774.3
Min nTPM: 1835.4
P10809_1017 1835.4
P10809_1025 2349.4
P10809_1044 1876.3
P10809_1063 2222.0
P10809_1092 2352.2
P10809_1105 2774.3
Naive B-cell
nTPM: 2173.6
Samples: 6

Max nTPM: 2755.0
Min nTPM: 1684.8
P10809_1011 1684.8
P10809_1029 2167.9
P10809_1048 2119.8
P10809_1067 2245.4
P10809_1091 2068.7
P10809_1104 2755.0

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

324.2
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 324.2
Samples: 4

Max nTPM: 573.5
Min nTPM: 90.3
RHH5310_R3677 261.3
RHH5218_R3590 90.3
RHH5247_R3619 573.5
RHH5276_R3648 371.6
Naive B-cell
nTPM: 262.4
Samples: 4

Max nTPM: 498.4
Min nTPM: 113.8
RHH5308_R3675 237.0
RHH5216_R3588 113.8
RHH5245_R3617 498.4
RHH5274_R3646 200.2
Non-switched memory B-cell
nTPM: 197.4
Samples: 4

Max nTPM: 326.5
Min nTPM: 104.0
RHH5309_R3676 254.1
RHH5217_R3589 105.1
RHH5246_R3618 104.0
RHH5275_R3647 326.5
Plasmablast
nTPM: 293.3
Samples: 4

Max nTPM: 363.4
Min nTPM: 196.2
RHH5312_R3679 363.4
RHH5220_R3592 196.2
RHH5249_R3621 303.1
RHH5278_R3650 310.3
Switched memory B-cell
nTPM: 195.0
Samples: 4

Max nTPM: 280.4
Min nTPM: 120.5
RHH5311_R3678 229.6
RHH5219_R3591 149.4
RHH5248_R3620 120.5
RHH5277_R3649 280.4

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

429.1
Schmiedel sample id TPM
Naive B-cell
TPM: 429.1
Samples: 91

Max TPM: 519.5
Min TPM: 259.9
B_CELL_NAIVE_1 519.5
B_CELL_NAIVE_2 501.4
B_CELL_NAIVE_3 501.4
B_CELL_NAIVE_4 497.9
B_CELL_NAIVE_5 497.8
B_CELL_NAIVE_6 494.6
B_CELL_NAIVE_7 489.9
B_CELL_NAIVE_8 488.4
B_CELL_NAIVE_9 481.7
B_CELL_NAIVE_10 480.5
B_CELL_NAIVE_11 469.7
B_CELL_NAIVE_12 468.8
B_CELL_NAIVE_13 468.7
B_CELL_NAIVE_14 467.1
B_CELL_NAIVE_15 466.7
B_CELL_NAIVE_16 466.1
B_CELL_NAIVE_17 463.3
B_CELL_NAIVE_18 462.6
B_CELL_NAIVE_19 462.5
B_CELL_NAIVE_20 460.5
B_CELL_NAIVE_21 456.9
B_CELL_NAIVE_22 454.8
B_CELL_NAIVE_23 451.2
B_CELL_NAIVE_24 449.7
B_CELL_NAIVE_25 449.0
B_CELL_NAIVE_26 448.3
B_CELL_NAIVE_27 447.5
B_CELL_NAIVE_28 446.9
B_CELL_NAIVE_29 445.8
B_CELL_NAIVE_30 443.8
B_CELL_NAIVE_31 443.7
B_CELL_NAIVE_32 443.5
B_CELL_NAIVE_33 443.3
B_CELL_NAIVE_34 442.2
B_CELL_NAIVE_35 439.8
B_CELL_NAIVE_36 439.7
B_CELL_NAIVE_37 438.7
B_CELL_NAIVE_38 438.1
B_CELL_NAIVE_39 434.0
B_CELL_NAIVE_40 432.6
B_CELL_NAIVE_41 431.8
B_CELL_NAIVE_42 431.0
B_CELL_NAIVE_43 429.1
B_CELL_NAIVE_44 428.5
B_CELL_NAIVE_45 428.5
B_CELL_NAIVE_46 428.1
B_CELL_NAIVE_47 427.8
B_CELL_NAIVE_48 425.9
B_CELL_NAIVE_49 425.6
B_CELL_NAIVE_50 424.3
B_CELL_NAIVE_51 424.1
B_CELL_NAIVE_52 423.4
B_CELL_NAIVE_53 423.2
B_CELL_NAIVE_54 422.9
B_CELL_NAIVE_55 421.9
B_CELL_NAIVE_56 420.0
B_CELL_NAIVE_57 419.9
B_CELL_NAIVE_58 419.8
B_CELL_NAIVE_59 419.6
B_CELL_NAIVE_60 418.5
B_CELL_NAIVE_61 416.3
B_CELL_NAIVE_62 415.6
B_CELL_NAIVE_63 415.0
B_CELL_NAIVE_64 413.7
B_CELL_NAIVE_65 412.8
B_CELL_NAIVE_66 411.8
B_CELL_NAIVE_67 411.7
B_CELL_NAIVE_68 409.7
B_CELL_NAIVE_69 407.8
B_CELL_NAIVE_70 407.1
B_CELL_NAIVE_71 406.6
B_CELL_NAIVE_72 404.5
B_CELL_NAIVE_73 403.3
B_CELL_NAIVE_74 402.5
B_CELL_NAIVE_75 400.4
B_CELL_NAIVE_76 399.6
B_CELL_NAIVE_77 397.1
B_CELL_NAIVE_78 394.0
B_CELL_NAIVE_79 392.2
B_CELL_NAIVE_80 389.6
B_CELL_NAIVE_81 387.7
B_CELL_NAIVE_82 387.4
B_CELL_NAIVE_83 386.3
B_CELL_NAIVE_84 385.8
B_CELL_NAIVE_85 380.4
B_CELL_NAIVE_86 367.8
B_CELL_NAIVE_87 365.7
B_CELL_NAIVE_88 353.2
B_CELL_NAIVE_89 342.9
B_CELL_NAIVE_90 330.2
B_CELL_NAIVE_91 259.9
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