A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1230.7
nTPM
Monaco:
210.4
nTPM
Schmiedel:
260.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1230.7
HPA sample
nTPM
Classical monocyte nTPM: 1230.7
Samples: 6
Max nTPM: 1938.7
Min nTPM: 872.1
P10809_1003
1938.7
P10809_1020
1011.5
P10809_1039
1143.3
P10809_1058
1047.1
P10809_1080
872.1
P10809_1107
1371.5
Intermediate monocyte nTPM: 1073.4
Samples: 6
Max nTPM: 1771.8
Min nTPM: 625.2
P10809_1004
841.8
P10809_1023
1263.7
P10809_1042
1029.0
P10809_1061
625.2
P10809_1081
908.8
P10809_1108
1771.8
Non-classical monocyte nTPM: 1107.9
Samples: 5
Max nTPM: 1682.2
Min nTPM: 751.4
P10809_1005
1033.7
P10809_1053
1078.0
P10809_1072
751.4
P10809_1082
994.0
P10809_1109
1682.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
210.4
Monaco sample
nTPM
Classical monocyte nTPM: 125.5
Samples: 4
Max nTPM: 165.1
Min nTPM: 81.8
RHH5313_R3680
165.1
RHH5221_R3593
126.3
RHH5250_R3622
81.8
RHH5279_R3651
128.8
Intermediate monocyte nTPM: 210.4
Samples: 4
Max nTPM: 268.5
Min nTPM: 113.9
RHH5314_R3681
225.8
RHH5222_R3594
268.5
RHH5251_R3623
233.3
RHH5280_R3652
113.9
Non-classical monocyte nTPM: 149.0
Samples: 4
Max nTPM: 188.9
Min nTPM: 77.1
RHH5315_R3682
188.9
RHH5223_R3595
148.7
RHH5252_R3624
181.3
RHH5281_R3653
77.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
260.5
Schmiedel sample id
TPM
Classical monocyte TPM: 260.5
Samples: 91
Max TPM: 329.7
Min TPM: 212.6
MONOCYTES_1
329.7
MONOCYTES_2
324.1
MONOCYTES_3
314.9
MONOCYTES_4
310.9
MONOCYTES_5
309.4
MONOCYTES_6
304.3
MONOCYTES_7
300.8
MONOCYTES_8
297.7
MONOCYTES_9
292.8
MONOCYTES_10
291.7
MONOCYTES_11
289.9
MONOCYTES_12
287.1
MONOCYTES_13
286.2
MONOCYTES_14
285.3
MONOCYTES_15
283.3
MONOCYTES_16
277.8
MONOCYTES_17
276.7
MONOCYTES_18
276.5
MONOCYTES_19
276.2
MONOCYTES_20
274.5
MONOCYTES_21
273.7
MONOCYTES_22
273.5
MONOCYTES_23
273.2
MONOCYTES_24
272.4
MONOCYTES_25
271.8
MONOCYTES_26
271.4
MONOCYTES_27
271.3
MONOCYTES_28
271.2
MONOCYTES_29
267.9
MONOCYTES_30
267.2
MONOCYTES_31
266.9
MONOCYTES_32
266.7
MONOCYTES_33
266.6
MONOCYTES_34
265.3
MONOCYTES_35
265.3
MONOCYTES_36
264.5
MONOCYTES_37
264.5
MONOCYTES_38
264.1
MONOCYTES_39
262.9
MONOCYTES_40
261.9
MONOCYTES_41
261.2
MONOCYTES_42
260.6
MONOCYTES_43
260.6
MONOCYTES_44
259.7
MONOCYTES_45
259.3
MONOCYTES_46
259.2
MONOCYTES_47
258.7
MONOCYTES_48
258.3
MONOCYTES_49
257.3
MONOCYTES_50
257.3
MONOCYTES_51
256.8
MONOCYTES_52
256.5
MONOCYTES_53
256.3
MONOCYTES_54
251.8
MONOCYTES_55
251.1
MONOCYTES_56
251.1
MONOCYTES_57
251.1
MONOCYTES_58
250.7
MONOCYTES_59
250.1
MONOCYTES_60
249.8
MONOCYTES_61
249.8
MONOCYTES_62
248.4
MONOCYTES_63
248.4
MONOCYTES_64
248.1
MONOCYTES_65
247.7
MONOCYTES_66
247.2
MONOCYTES_67
247.2
MONOCYTES_68
246.8
MONOCYTES_69
246.8
MONOCYTES_70
246.1
MONOCYTES_71
245.9
MONOCYTES_72
245.6
MONOCYTES_73
245.4
MONOCYTES_74
237.7
MONOCYTES_75
236.6
MONOCYTES_76
236.0
MONOCYTES_77
235.9
MONOCYTES_78
235.2
MONOCYTES_79
234.7
MONOCYTES_80
234.1
MONOCYTES_81
233.7
MONOCYTES_82
233.5
MONOCYTES_83
232.5
MONOCYTES_84
230.6
MONOCYTES_85
226.3
MONOCYTES_86
223.9
MONOCYTES_87
223.2
MONOCYTES_88
223.1
MONOCYTES_89
221.6
MONOCYTES_90
214.4
MONOCYTES_91
212.6
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Non-classical monocyte TPM: 257.1
Samples: 90
Max TPM: 347.8
Min TPM: 208.4
M2_1
347.8
M2_2
319.2
M2_3
308.7
M2_4
305.8
M2_5
300.0
M2_6
299.9
M2_7
295.8
M2_8
292.2
M2_9
290.0
M2_10
288.9
M2_11
288.7
M2_12
287.1
M2_13
286.9
M2_14
285.6
M2_15
281.1
M2_16
277.3
M2_17
272.7
M2_18
272.6
M2_19
270.4
M2_20
270.3
M2_21
269.5
M2_22
269.1
M2_23
268.2
M2_24
268.0
M2_25
267.6
M2_26
267.2
M2_27
267.2
M2_28
266.9
M2_29
265.8
M2_30
265.1
M2_31
264.0
M2_32
263.2
M2_33
262.7
M2_34
258.9
M2_35
258.6
M2_36
258.6
M2_37
258.1
M2_38
257.9
M2_39
257.2
M2_40
257.0
M2_41
256.4
M2_42
255.5
M2_43
255.2
M2_44
255.1
M2_45
254.6
M2_46
254.6
M2_47
254.3
M2_48
254.2
M2_49
253.9
M2_50
252.0
M2_51
251.3
M2_52
251.1
M2_53
250.6
M2_54
250.2
M2_55
249.4
M2_56
249.1
M2_57
248.9
M2_58
248.6
M2_59
248.5
M2_60
248.4
M2_61
248.1
M2_62
247.5
M2_63
247.2
M2_64
247.0
M2_65
245.5
M2_66
244.2
M2_67
243.2
M2_68
243.2
M2_69
242.1
M2_70
241.9
M2_71
241.0
M2_72
240.6
M2_73
236.9
M2_74
236.0
M2_75
235.7
M2_76
233.6
M2_77
233.5
M2_78
232.9
M2_79
229.9
M2_80
228.3
M2_81
227.4
M2_82
226.7
M2_83
221.9
M2_84
220.6
M2_85
219.3
M2_86
219.2
M2_87
218.2
M2_88
212.3
M2_89
211.5
M2_90
208.4
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