A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1668.3
nTPM
Monaco:
117.4
nTPM
Schmiedel:
309.1
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1668.3
HPA sample
nTPM
NK-cell nTPM: 1668.3
Samples: 6
Max nTPM: 1995.5
Min nTPM: 913.1
P10809_1013
1334.7
P10809_1033
1942.1
P10809_1052
1829.0
P10809_1071
1995.5
P10809_1093
913.1
P10809_1103
1995.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
117.4
Monaco sample
nTPM
NK-cell nTPM: 117.4
Samples: 4
Max nTPM: 140.0
Min nTPM: 105.3
RHH5316_R3683
140.0
RHH5224_R3596
109.7
RHH5253_R3625
105.3
RHH5282_R3654
114.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
309.1
Schmiedel sample id
TPM
NK-cell TPM: 309.1
Samples: 90
Max TPM: 409.8
Min TPM: 239.8
NK_1
409.8
NK_2
407.5
NK_3
390.2
NK_4
385.5
NK_5
381.3
NK_6
375.2
NK_7
374.1
NK_8
369.4
NK_9
362.6
NK_10
355.8
NK_11
355.5
NK_12
353.4
NK_13
344.3
NK_14
343.1
NK_15
341.5
NK_16
340.7
NK_17
340.4
NK_18
337.1
NK_19
336.5
NK_20
334.6
NK_21
334.6
NK_22
334.1
NK_23
333.2
NK_24
331.7
NK_25
331.3
NK_26
331.1
NK_27
331.1
NK_28
329.8
NK_29
329.2
NK_30
328.2
NK_31
327.3
NK_32
325.3
NK_33
323.9
NK_34
322.9
NK_35
321.0
NK_36
320.6
NK_37
319.9
NK_38
319.7
NK_39
318.2
NK_40
315.2
NK_41
311.3
NK_42
310.0
NK_43
309.2
NK_44
307.2
NK_45
306.9
NK_46
306.0
NK_47
304.4
NK_48
302.8
NK_49
302.6
NK_50
301.5
NK_51
299.6
NK_52
299.3
NK_53
297.0
NK_54
295.4
NK_55
293.4
NK_56
292.4
NK_57
291.9
NK_58
291.4
NK_59
290.8
NK_60
290.5
NK_61
286.5
NK_62
285.7
NK_63
284.0
NK_64
283.6
NK_65
283.5
NK_66
283.1
NK_67
282.3
NK_68
281.0
NK_69
279.7
NK_70
279.2
NK_71
276.4
NK_72
276.2
NK_73
276.0
NK_74
271.6
NK_75
271.0
NK_76
268.4
NK_77
268.1
NK_78
267.2
NK_79
267.0
NK_80
263.6
NK_81
262.7
NK_82
259.9
NK_83
258.8
NK_84
256.2
NK_85
252.1
NK_86
250.0
NK_87
248.7
NK_88
247.6
NK_89
239.8
NK_90
239.8
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