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HDLBP
HPA
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Brain region
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ipTM
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • HDLBP
INTERACTION INTERACTION METABOLIC PATHWAYS Show tissue menu
TRANSPORT REACTIONS
Protein interactions
Protein interactions
Methods
Human metabolism
Metabolic proteins
Methods
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

HDLBP
Synonyms HBP, VGL
Gene descriptioni

Full gene name according to HGNC.

High density lipoprotein binding protein
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Read more
Metabolic proteins
Plasma proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.
  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)

HUMAN PROTEIN ATLAS INFORMATIONi

Summary of RNA expression analysis and annotation data generated within the Human Protein Atlas project.

Single cell type
expression clusteri

The RNA data was used to cluster genes according to their expression across single cell types. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Plasma cells - Antibody production & secretion (mainly)
Single cell type specificityi

The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected.

Cell type enhanced (Epididymal principal cells, Late spermatids, Pancreatic acinar cells)
Tissue expression
cluster (RNA)i

The RNA data was used to cluster genes according to their expression across tissues. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Stomach - Digestion (mainly)
Tissue specificity (RNA)i

The RNA specificity category is based on mRNA expression levels in the consensus dataset which is calculated from the RNA expression levels in samples from HPA and GTEX. The categories include: tissue enriched, group enriched, tissue enhanced, low tissue specificity and not detected.

Low tissue specificity
Subcellular locationi

Main subcellular location based on data generated in the subcellular section of the Human Protein Atlas.

Localized to the Endoplasmic reticulum In addition localized to the Nuclear bodies
Secretome annotationi

All genes with at least one predicted secreted isoform have been annotated and classified with the aim to determine if the corresponding protein(s) are:

  • secreted into blood
  • locally secreted
  • or actually being attached to membrane or retained in intracellular locations like mitochondria, endoplasmatic reticulum (ER), Golgi apparatus or lysosomes.
Not available
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 2
Cytoband q37.3
Chromosome location (bp) 241227264 - 241317061
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

27
Ensembl ENSG00000115677 (version 109)
Entrez gene 3069
HGNC HGNC:4857
UniProt Q00341
GeneCards HDLBP
ASSAYSi

Links to data of the different assays available in the Structure & Interaction resource of the Human Protein Atlas. Click on the miniature images to directly get to the respective section.

Interaction Metabolic
INTERACTIONi

In the Interaction part of this page network plots showing the gene's first-level interaction partners according to four different datasets are displayed, including a consensus network plot showing only interactions present in at least two of the datasets. By clicking on nodes the network can be expanded. In the network plots the nodes represent genes and edge color represent the number of datasets the interaction belongs to. In-house generated AlphaFold 3 predicted 3D structures for interactions in the consensus network are displayed by clicking on the blue symbols on the edges.

The highlight bar in the top of the plot can be used to color the nodes according to subcellular location (based on data in the Subcellular section), predicted location (based on signalpeptide and transmembrane region predictions), tissue specificity (based on RNA tissue expression profiles) or proteinclass. For genes categorised as single cell type or group specific the option to highlight interaction partners expressed in the same cell type will also be available in the highlight bar.

Custom highlighting of nodes is possible using the top left Filter option in which a query of choice can be built to for example label all nodes that are tissue enriched in both human and mouse brain or those that belongs to a certain tissue expression cluster. The expression cluster for the gene is stated in the box Human Protein Atlas Information above the network plot. Click on Filter in the top left in the plot to find the query builder and some example queries.

Interactions included are direct interaction and physical associations with high and medium confidence from IntAct, physical multivalidated interactions from BioGRID, interactions with>75% probability from BioPlex and significant physical interactions from OpenCell.

Filter menu »
Fields »
e.g. Brain enriched, Localized to mitochondria, Stomach - Digestion

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


Consensus
IntAct
BioGrid
OpenCell
BioPlex
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Non-commercial use only, subject to AlphaFold3 Output Terms of Use

Interaction:
Color scheme:
Confidence
Antibodies
Interactor
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PAE plot
Number of interactions: 5
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
CTCF5378610550
G3BP2374681650
PINK1161664099
PSPC1205332700
RACK156991442081
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 3 View all protein interaction data in IntAct
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
CTCF5378610550
FMR1101743110
RAD5114187500
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 43
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
ADAR8239190
AGR236422702
BRAF171134301
C1orf354331500
CCNF4462401
CSNK2A1996724918422
CTCF5378610550
DHX948141261131
ESR1345947900
FBXO42551504
G3BP2374681650
GTF2E2251107
HSPA8654545729101
ILF38461761551
LRRC5951490130
NFX1352740
OBSL1426660
PCBP110188021
PINK1161664099
PLXNB2158017
PRKDC1113143171
PRKN1111140500
PRPF833221651814
PSPC1205332700
RACK156991442081
RAF13242196140
RPA171042011
S100A10391322
SAE1379113
SERBP1166151350
SNRNP2722405
SNRNP701611168110
TAOK100521
TENT5A33800
TOP3B3109550
TOPBP1445100
UBA6112116
UNC45A272120
UPF1331789520
VCP5756348435
XRCC51418135132
XRCC62123231152
ZNF598402780
Show allShow less
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 8
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
ATG1389181370
EMC95261284
G3BP2374681650
PSPC1205332700
RACK156991442081
RPL19726114120109
RPS113861011215
RPS16102513929547
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 14
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
CIAO2A4216082
EEF1AKMT31510169
GGH2141106
GSTM3246024
MRPL4214225297
NPAS10000146
OSGEP6510131
PINK1161664099
RFXANK339061
UBXN6711181142
USP32224024
WASHC3154518722
WDR592213131
WIF1040087
Show allShow less
METABOLIC SUMMARYi

In this summary the pathway/subsystems to which the gene belongs is shown together with the associated cellular compartment for the reactions based on metabolite information. The number of proteins and metabolites in the pathway is shown as well as the number of reactions for the selected gene. By clicking on a pathway in the summary table the associated metabolic network map is shown, together with a gene-tissue heatmap that shows the expression of genes in that pathway in different tissues.

Gene HDLBP is associated with 2 reactions in 1 different subsystems, and present in the compartments: Cytosol, Golgi apparatus, Lysosome. Provided by metabolicatlas.org
Pathway / Subsystem Subsystem-associated compartments # proteins # metabolites # reactions for
this protein
Transport reactions Cytosol, Extracellular, Lysosome, Peroxisome, Mitochondria, Golgi apparatus, Endoplasmic reticulum, Nucleus, Inner mitochondria 563 1599 2
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.

Splice variant SwissProt TrEMBL Protein class Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
HDLBP-201 A0A024R4E5
Metabolic proteins
Predicted intracellular proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
1268 aa
141.4 kDa
No 0
HDLBP-202 H0Y394
Metabolic proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
973 aa
108.7 kDa
No 0
HDLBP-203 A0A024R4E5
Metabolic proteins
Predicted intracellular proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
1268 aa
141.4 kDa
No 0
HDLBP-204 A0A024R4E5
Metabolic proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
1268 aa
141.4 kDa
No 0
HDLBP-205 C9JHN6
Metabolic proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
81 aa
8.8 kDa
No 0
HDLBP-206 C9JB08
Metabolic proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
14 aa
1.5 kDa
No 0
HDLBP-207 C9JBS3
Metabolic proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
69 aa
7.5 kDa
No 0
HDLBP-208 C9JQ82
Metabolic proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
53 aa
5.7 kDa
No 0
HDLBP-209 C9JIZ1
Metabolic proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
224 aa
24.7 kDa
No 0
HDLBP-210 C9JHN6
Metabolic proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
81 aa
8.8 kDa
No 0
HDLBP-211 C9JEJ8
Metabolic proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
79 aa
8.5 kDa
No 0
HDLBP-212 C9JT62
Metabolic proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
96 aa
10.6 kDa
No 0
HDLBP-213 C9J739
Metabolic proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
19 aa
2 kDa
No 0
HDLBP-214 Q00341
Metabolic proteins
Predicted intracellular proteins
Plasma proteins
Mapped to neXtProt
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
1235 aa
138 kDa
No 0
HDLBP-215 H7C2D1
Metabolic proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
308 aa
34.2 kDa
No 0
HDLBP-216 C9J5E5
Metabolic proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
221 aa
24.4 kDa
No 0
HDLBP-217 C9JHZ8
Metabolic proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
141 aa
15.5 kDa
No 0
HDLBP-218 C9JHS7
Metabolic proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
126 aa
13.9 kDa
No 0
HDLBP-219 C9JK79
Metabolic proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
128 aa
14.3 kDa
No 0
HDLBP-220 H7C3D0
Metabolic proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
126 aa
13.7 kDa
No 0
HDLBP-221 C9JES8
Metabolic proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
147 aa
16.2 kDa
No 0
HDLBP-222 C9JHS9
Metabolic proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
17 aa
1.9 kDa
No 0
HDLBP-223 C9JE93
Metabolic proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
36 aa
4.1 kDa
No 0
HDLBP-224 C9JZI8
Metabolic proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
164 aa
18.1 kDa
No 0
HDLBP-225 H7BZC3
Metabolic proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
267 aa
29.8 kDa
No 0
HDLBP-226 H7C0A4
Metabolic proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
332 aa
36.9 kDa
No 0
HDLBP-227 C9JMQ6
Metabolic proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
46 aa
5 kDa
No 0
Show allShow less

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