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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:133.6 nTPM
HPA Brain:147.6 nTPM
GTEx:133.6 nTPM
FANTOM5:140.3 Scaled Tags Per Million
Pig:129.0 nTPM
Mouse:112.4 nTPM
Allen mouse:22.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.6
Sample id Sample description nTPM
Amygdala
nTPM: 147.6
2814 Male, age 76, right hemisphere 165.9
2514 Male, age 75, right hemisphere 164.3
2695 Female, age 67, right hemisphere 149.1
1987 Female, age 91, left hemisphere 137.7
2517 Female, age 94, left hemisphere 121.0
Basal amygdala
nTPM: 103.3
2110 Male, age 80, left hemisphere 121.0
1955 Male, age 76, both hemispheres 117.0
2609 Male, age 75, right hemisphere 115.4
2685 Female, age 94, left hemisphere 105.0
2243 Female, age 91, right hemisphere 89.4
2827 Female, age 67, right hemisphere 71.7
Central amygdala
nTPM: 118.9
1905 Male, age 76, both hemispheres 152.9
2515 Male, age 75, right hemisphere 124.1
2826 Female, age 94, left hemisphere 113.7
2239 Male, age 80, left hemisphere 104.6
2701 Female, age 91, right hemisphere 99.1
Corticomedial amygdala
nTPM: 103.3
2428 Male, age 75, right hemisphere 136.9
2429 Female, age 94, left hemisphere 114.3
2829 Male, age 80, left hemisphere 109.1
2240 Male, age 76, both hemispheres 100.4
2242 Female, age 91, right hemisphere 94.0
2535 Female, age 67, right hemisphere 65.0
Lateral amygdala
nTPM: 117.8
1883 Male, age 76, both hemispheres 149.4
2516 Male, age 75, right hemisphere 138.2
2534 Female, age 94, left hemisphere 121.5
2256 Male, age 80, left hemisphere 101.6
2830 Female, age 67, right hemisphere 101.3
2255 Female, age 91, right hemisphere 94.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

133.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 133.6
Samples: 181

Max nTPM: 289.7
Min nTPM: 66.2
Std nTPM: 29.4
Median nTPM: 128.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 289.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 247.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 214.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 207.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 207.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 199.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 198.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 185.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 185.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 184.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 179.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 177.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 177.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 174.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 172.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 171.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 168.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 168.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 166.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 165.9
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 164.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 163.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 162.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 160.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 159.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 158.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 158.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 157.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 157.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 156.6
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 156.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 155.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 155.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 153.1
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 153.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 149.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 149.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 148.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 148.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 147.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 147.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 147.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 147.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 146.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 146.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 146.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 146.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 145.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 144.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 144.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 144.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 144.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 144.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 143.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 143.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 143.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 143.1
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 142.8
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 142.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 142.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 141.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 141.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 141.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 141.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 141.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 141.1
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 141.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 140.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 140.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 140.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 140.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 139.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 138.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 137.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 137.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 136.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 136.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 136.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 135.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 134.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 134.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 134.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 134.0
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 133.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 132.4
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 129.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 129.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 129.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 129.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 128.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 128.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 128.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 128.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 128.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 128.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 128.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 127.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 127.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 127.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 127.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 126.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 126.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 126.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 125.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 124.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 124.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 124.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 124.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 124.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 124.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 123.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 123.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 122.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 122.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 122.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 121.8
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 121.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 121.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 121.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 121.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 120.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 120.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 119.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 119.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 118.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 118.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 118.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 118.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 117.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 117.8
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 117.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 117.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 116.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 116.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 115.8
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 115.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 115.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 115.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 115.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 115.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 114.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 114.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 114.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 111.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 111.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 111.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 110.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 110.5
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 109.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 108.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 107.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 107.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 107.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 106.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 106.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 105.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 105.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 105.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 104.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 104.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 104.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 104.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 104.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 103.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 102.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 101.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 100.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 99.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 95.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 94.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 93.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 93.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 91.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 91.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 90.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 87.0
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 86.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 84.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 84.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 74.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 66.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

140.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 140.3
FF:10151-102I7 76 years, female 140.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

129.0
Pig sample Sample description nTPM
Amygdala
nTPM: 129.0
Samples: 4

Max nTPM: 149.7
Min nTPM: 110.1
Sample A Female 149.7
Sample B Female 142.5
Sample C Male 113.8
Sample D Male 110.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

112.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 112.4
Samples: 4

Max nTPM: 123.2
Min nTPM: 99.5
Sample A Male 118.2
Sample B Male 99.5
Sample C Female 123.2
Sample D Female 108.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

22.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 22.1
69015793 Antisense, RP_050315_01_G01, Mouse strain C57BL/6J (56 days, male) 22.1

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