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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:418.9 nTPM
HPA Brain:260.5 nTPM
GTEx:418.9 nTPM
FANTOM5:236.6 Scaled Tags Per Million
Pig:247.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

260.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 212.6
1981 Female, age 72, midline 308.5
2048 Male, age 55, midline 210.4
2816 Male, age 47, midline 198.2
2565 Male, age 75, midline 173.4
2194 Female, age 79, both hemispheres 172.5
Cervical spinal cord, dorsal horn
nTPM: 260.5
2296 Male, age 66, both hemispheres 459.5
2173 Female, age 72, unknown 362.7
2069 Male, age 47, both hemispheres 270.1
1877 Male, age 55, unknown 187.7
2297 Male, age 75, both hemispheres 150.6
2721 Male, age 90, both hemispheres 132.2
Cervical spinal cord, ventral horn
nTPM: 228.9
2098 Female, age 72, unknown 359.3
2068 Male, age 55, unknown 224.7
2809 Male, age 90, both hemispheres 217.9
2480 Male, age 75, both hemispheres 217.6
2295 Male, age 66, both hemispheres 180.2
2820 Female, age 79, both hemispheres 173.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

418.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 418.9
Samples: 204

Max nTPM: 775.9
Min nTPM: 132.3
Std nTPM: 137.2
Median nTPM: 413.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 775.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 731.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 703.0
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 698.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 693.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 684.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 682.5
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 681.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 679.2
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 673.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 672.5
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 663.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 651.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 650.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 650.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 643.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 640.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 637.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 630.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 628.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 615.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 612.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 606.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 596.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 594.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 589.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 584.8
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 583.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 578.4
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 575.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 575.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 574.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 564.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 556.4
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 548.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 547.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 546.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 541.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 536.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 536.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 535.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 531.2
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 529.5
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 528.7
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 528.7
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 526.1
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 524.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 518.8
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 515.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 514.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 504.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 504.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 499.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 498.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 494.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 492.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 492.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 491.9
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 491.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 491.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 491.0
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 489.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 488.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 484.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 483.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 479.5
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 478.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 478.8
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 477.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 472.0
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 470.2
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 469.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 464.4
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 459.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 457.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 454.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 454.9
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 452.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 450.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 448.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 446.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 445.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 444.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 444.0
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 441.0
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 438.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 438.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 437.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 435.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 427.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 426.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 426.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 426.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 424.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 424.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 424.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 422.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 421.9
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 418.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 414.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 414.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 413.5
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 412.5
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 409.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 408.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 407.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 407.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 407.0
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 405.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 405.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 405.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 402.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 401.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 399.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 399.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 398.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 390.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 389.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 388.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 384.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 384.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 382.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 379.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 376.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 376.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 375.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 375.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 368.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 366.8
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 366.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 365.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 365.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 364.2
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 360.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 360.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 360.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 355.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 351.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 349.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 344.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 343.3
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 342.4
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 341.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 339.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 338.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 337.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 332.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 330.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 329.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 329.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 329.0
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 325.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 323.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 321.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 318.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 315.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 310.4
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 310.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 310.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 305.3
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 301.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 300.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 295.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 293.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 289.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 289.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 284.5
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 277.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 273.2
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 272.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 269.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 265.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 262.5
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 261.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 259.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 256.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 254.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 253.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 251.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 250.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 247.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 241.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 240.0
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 239.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 235.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 231.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 230.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 230.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 229.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 225.3
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 224.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 208.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 202.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 202.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 201.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 189.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 183.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 182.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 179.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 172.9
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 172.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 160.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 142.7
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 132.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

236.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 236.6
FF:10181-103D1 60 years, female 271.6
FF:10159-103A6 76 years, female 201.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

247.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 214.9
Samples: 4

Max nTPM: 230.2
Min nTPM: 195.1
Sample A Female 213.3
Sample B Female 230.2
Sample C Male 221.1
Sample D Male 195.1
Ventral spinal cord
nTPM: 247.1
Samples: 4

Max nTPM: 265.4
Min nTPM: 224.2
Sample A Female 251.7
Sample B Female 265.4
Sample C Male 224.2
Sample D Male 247.2

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