MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:209.8 nTPM
HPA Brain:194.6 nTPM
GTEx:209.8 nTPM
FANTOM5:235.7 Scaled Tags Per Million
Pig:227.3 nTPM
Mouse:88.8 nTPM
Allen mouse:18.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 194.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 160.9
2411 Female, age 72, unknown 221.6
1870 Female, age 42, unknown 214.8
2019 Male, age 18, unknown 205.0
1830 Male, age 51, unknown 171.7
1833 Male, age 53, unknown 170.1
2828 Female, age 72, unknown 145.8
1827 Male, age 72, unknown 137.3
2219 Male, age 76, both hemispheres 124.5
2666 Male, age 74, left hemisphere 119.8
2586 Male, age 75, left hemisphere 98.6
Dorsal raphe nucleus
nTPM: 187.6
2750 Male, age 76, both hemispheres 221.3
2298 Female, age 72, unknown 198.8
2047 Male, age 72, unknown 176.4
1828 Male, age 53, unknown 173.3
2016 Female, age 72, unknown 167.9
Inferior colliculus
nTPM: 148.6
2097 Female, age 72, unknown 175.3
1890 Male, age 53, unknown 157.0
1848 Female, age 42, unknown 143.6
2849 Male, age 72, unknown 118.3
Median raphe nucleus
nTPM: 183.3
2220 Male, age 76, midline 183.3
Periaquaductal grey, anterior
nTPM: 140.9
2502 Female, age 75, unknown 158.9
1947 Male, age 18, unknown 140.1
1795 Male, age 51, unknown 123.5
Periaquaductal grey, dorsal
nTPM: 135.4
2850 Male, age 76, both hemispheres 150.3
2464 Female, age 72, unknown 137.2
1840 Male, age 53, unknown 130.9
1831 Male, age 72, unknown 123.1
Periaquaductal grey, lateral
nTPM: 144.4
2272 Male, age 74, both hemispheres 160.7
2140 Male, age 76, both hemispheres 141.6
2053 Male, age 18, unknown 130.9
Pretectal area
nTPM: 147.1
2273 Male, age 74, both hemispheres 190.6
1817 Female, age 42, unknown 161.9
2007 Male, age 72, unknown 161.0
1815 Male, age 53, unknown 157.3
2667 Female, age 75, unknown 157.3
2224 Female, age 72, unknown 155.1
2316 Male, age 76, right hemisphere 154.0
2825 Male, age 18, unknown 129.3
1816 Male, age 51, unknown 128.2
1944 Female, age 72, unknown 121.9
2407 Male, age 75, both hemispheres 101.1
Red nucleus
nTPM: 194.6
1821 Female, age 72, unknown 265.2
1904 Male, age 53, unknown 227.9
1865 Male, age 51, unknown 224.4
2769 Male, age 72, unknown 212.4
2227 Male, age 72, unknown 209.6
1954 Female, age 42, unknown 203.9
2823 Male, age 76, right hemisphere 197.4
2503 Female, age 72, unknown 195.6
2785 Male, age 18, unknown 189.0
2725 Female, age 75, unknown 154.5
2588 Male, age 74, left hemisphere 141.3
2584 Male, age 75, left hemisphere 113.5
Substantia nigra
nTPM: 165.2
2409 Female, age 72, unknown 199.2
1851 Male, age 51, unknown 196.4
1916 Female, age 42, unknown 184.2
1889 Female, age 72, unknown 175.5
2241 Male, age 72, unknown 172.5
2699 Male, age 18, unknown 159.9
2590 Female, age 75, unknown 150.8
1941 Male, age 53, unknown 146.6
2583 Male, age 75, right hemisphere 134.1
2665 Male, age 74, both hemispheres 132.4
Superior colliculus
nTPM: 145.5
1913 Female, age 42, unknown 183.5
2587 Male, age 74, left hemisphere 183.2
1995 Male, age 72, unknown 161.5
1895 Male, age 76, right hemisphere 155.3
2668 Female, age 75, unknown 154.5
1839 Male, age 51, unknown 138.5
2261 Male, age 18, unknown 137.2
1796 Male, age 53, unknown 131.5
2087 Female, age 72, unknown 127.4
2664 Male, age 75, both hemispheres 82.4
Ventral tegmental area
nTPM: 184.8
2223 Female, age 72, unknown 225.9
2410 Female, age 72, unknown 224.4
2218 Male, age 76, both hemispheres 172.8
1915 Female, age 42, unknown 169.8
2021 Male, age 53, unknown 161.6
1942 Male, age 51, unknown 154.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 209.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 209.8
Samples: 183

Max nTPM: 457.6
Min nTPM: 90.7
Std nTPM: 61.8
Median nTPM: 200.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 457.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 441.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 412.0
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 408.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 387.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 374.0
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 361.9
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 341.1
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 316.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 315.5
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 311.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 235.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 235.7
FF:10158-103A5 76 years, female 235.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 227.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 219.7
Samples: 4

Max nTPM: 282.6
Min nTPM: 178.1
Sample A Female 282.6
Sample B Female 203.4
Sample C Male 214.5
Sample D Male 178.1
Midbrain
nTPM: 222.6
Samples: 4

Max nTPM: 276.4
Min nTPM: 180.7
Sample A Female 276.4
Sample B Female 222.4
Sample C Male 211.0
Sample D Male 180.7
Periaqueductal gray
nTPM: 183.4
Samples: 3

Max nTPM: 193.3
Min nTPM: 165.3
Sample B Female 191.5
Sample C Male 193.3
Sample D Male 165.3
Superior colliculi
nTPM: 227.3
Samples: 4

Max nTPM: 257.7
Min nTPM: 195.6
Sample A Female 257.7
Sample B Female 242.1
Sample C Male 213.9
Sample D Male 195.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 88.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 88.8
Samples: 4

Max nTPM: 99.8
Min nTPM: 79.2
Sample A Male 92.2
Sample B Male 79.2
Sample C Female 84.0
Sample D Female 99.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 18.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 18.7
69015793 Antisense, RP_050315_01_G01, Mouse strain C57BL/6J (56 days, male) 18.7

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